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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

ATGCAGCGGAAGAGGATCGCATTCGCGAGCTACATGTACATTCTTCTCTACATTGTGATTTCCAGCGGCCAGATCTTCTTCAACAAGgtttgatcagcttagaaaatttccaatgcagggtagcgcaatttcccttcgatccgtgactggtatttttttttctctcgttcttccatttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ13152
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ13152 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA15G40160.1 (Glycine max), 5'ss of exon 1
-------------ATGCAGCGGAAGAGGATCGCATTCGCGAGCTACATGTACATTCTTCTCTACATTGTGATTTCCAGCGGCCAGATCTTCTTCAACAAGgtt-----tgatcagcttagaaa-atttccaatgcagggtagcgcaatttcccttcgatccgtgactggtatttttttttctctcgttcttccatttgcag
               | | | |||||        |||   | ||||  ||||||||||||||||||||   | ||||||||||| ||||||||||||||||||      |||||  | | |   |  | |  | |   ||       ||||||   ||   | | |    |   |||      | | | |  |       |
GTTTGCATCAATGGCGGATCTGAAGAACGGTAATTTCCTCACCTACGCGTACATTCTTCTCTACATTGCTCTCTCCAGCGGCCAAATCTTCTTCAACAAGgttaccgtcgatcacttcaaattcacattctcttctccgtttgtttgtttccccgtgaattgcg-cgaaaacgctttgccacatagatatcgctaaaatgg

upper sequence: EFJ13152 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA08G18730.1 (Glycine max), 5'ss of exon 2
------------ATGCAGCGGAAGAGGATCGCATTCGCGAGCTACATGTACATTCTTCTCTACATTGTGATTTCCAGCGGCCAGATCTTCTTCAACAAGgtt--tgatcagc-ttagaaaatttccaatgcagggtagcgca-atttcccttcgatccgtgactggtatttttttttctctcgttcttccatttgcag--
              | | | |||||        |||   | ||||  |||||||||||||||||||    | ||||||||||| ||||||||||||||||||   |   | |  |  ||| | ||  || |       ||    ||||||   ||   | | |    ||  ||| |    | | | |  |       |  
TTTGCATCAATGGCGGATCTGAAGAACCGTAATTTCCTCACCTACGCGTACATTCTTCTCTACATTACTCTCTCCAGCGGCCAAATCTTCTTCAACAAGgttaccgtctatcacttcaaactctcgcattctcttctccgtttgtttcccagtgaattgcg-cgaaaatgctttgtctcatagatatcgcggaaatggat