Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcttgacgactaggctatctagtaccgaagtaattttgatattccagGTTCGTCTACTTGAATGGGCGGACGACGTTGAGCTACATCATCTAAAAGGCTATGGCGATTCAATCAATTACAAAATGGGCATCTCTCTACTTTCCAACG

Basic information

species Selaginella moellendorffii
transcript EFJ13138
intron # 6
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169076399|gb|FE486014.1|FE486014
EST:     CTGTGTTAGAGATCACTACGCAAGCTTGCAAGCTCTTTCTTCCAGAAGAG                         GTTCGTCTACTTGAATGGGCGGACGACGTTGAGCTACATCATCTAAAAGGC
genomic: CTGTGTTAGAGATCACTACGCAAGCTTGCAAGCTCTTTCTTCCAGAAGAGgtatcttgac ... gatattccagGTTCGTCTACTTGAATGGGCGGACGACGTTGAGCTACATCATCTAAAAGGC
EST: gi|169031319|gb|FE441161.1|FE441161
EST:     CTGTGTTAGAGATCACTACGCAAGCTTGCAAGCTCTTTCTTCCAGAAGAG                         GTTCGTCTACTTGAATGNGCGGACGACGTTGAGCTACATCATCTAAAAGGC
genomic: CTGTGTTAGAGATCACTACGCAAGCTTGCAAGCTCTTTCTTCCAGAAGAGgtatcttgac ... gatattccagGTTCGTCTACTTGAATGGGCGGACGACGTTGAGCTACATCATCTAAAAGGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatcttgacgactaggctatctagtaccgaagtaattttgatattccagGTTCGTCTACTTGAATGGGCGGACGACGTTGAGCTACATCATCTAAAAGGCTATGGCGATTCAATCAATTACAAAATGGGCATCTCTCTACTTTCCAACG
                                            aagtaattttgatatt  TA-rich tract