1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtgagtgactgggttttaagtatcctcgttcatgctttgaaatctttgctctttttttcttttctttctttgggacagAGCTAGAGGAGCAGTGATTGTCAAGGATCTGGAGCTGCCTAACGCTGAAGAGATCGTGAGCACAAAGAACGAGGATCTGGTGCTACAAATCGATTTCAAG
species | Selaginella moellendorffii |
transcript | EFJ13129 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: ATTTCTGGTGATATGGAGAAACTCTTTTCTCTGGCAAT AGCTAGAGGAGCAGTGATTGTCAAGGATCTGGAGCTGCCTAACGCTGAAGAEST: gi|169083834|gb|FE492746.1|FE492746
genomic: ATTTCTGGTGATATGGAGAAACTCTTTTCTCTGGCAATgtgagtgact ... tttgggacagAGCTAGAGGAGCAGTGATTGTCAAGGATCTGGAGCTGCCTAACGCTGAAGA
EST: GTCATCGACGAGATTTCTGGTGATATGGAGAAACTCTTTTCTCTGGCAAT AGCTAGAGGAGCAGTGATTGTCAAGGATCTGGAGCTGCCTAACGCTGAAGAEST: gi|169029837|gb|FE441044.1|FE441044
genomic: GTCATCGACGAGATTTCTGGTGATATGGAGAAACTCTTTTCTCTGGCAATgtgagtgact ... tttgggacagAGCTAGAGGAGCAGTGATTGTCAAGGATCTGGAGCTGCCTAACGCTGAAGA
EST: GTCATCAAAGATATTTCTGGTGATATGGAGAAACTCTTTTCTCTGGCAAT AGCTAGAGGAGCAGTGATTGTCAAGGATCTGGAGCTGCCTAACGCTGAAGAEST: gi|169022700|gb|FE429727.1|FE429727
genomic: GTCATCGACGAGATTTCTGGTGATATGGAGAAACTCTTTTCTCTGGCAATgtgagtgact ... tttgggacagAGCTAGAGGAGCAGTGATTGTCAAGGATCTGGAGCTGCCTAACGCTGAAGA
EST: GTCATCGACGAGATTTCTGGTGATATGGAGAAACTCTTTTCTCTGGCAAT AGCTAGAGGAGCAGTGATTGTCAAGGATCTGGAGCTGCCTAACGCTGAAGA
genomic: GTCATCGACGAGATTTCTGGTGATATGGAGAAACTCTTTTCTCTGGCAATgtgagtgact ... tttgggacagAGCTAGAGGAGCAGTGATTGTCAAGGATCTGGAGCTGCCTAACGCTGAAGA
cctcgttcatgctttgaaatctttgctctttttttcttttctttctttgggacagAGCTAGAGGAGCAGTGATTGTCAAGGATCTGGAGCTGCCTAACGCTGAAGAGATCGTGAGCACAAAGAACGAGGATCTGGTGCTACAAATCGATTTCAAG
ctttgaaatctttgct CT-rich tract
tttttttcttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagtgactgggttttaagtatcctcgttcatgctttgaaatctttgctctttttttcttttctttctttgggacagAGCTAGAGGAGCAGTGATTGTCAAGGATCTGGAGCTGCCTAACGCTGAAGAGATCGTGAGCACAAAGAACGAGGATCTGGTGCTACAAATCGATTTCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAT