1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
...gtgtaaagttagccagcgctcacagtcaggtgtgttcatctcccttcatcaaccttgatctggatcctgagaaggtgaagcaagaactctcctgagccagTAAAATCTGTGGAGCCGCCCCCGTTTCATGTTCTTGGAAATCCAGTCGGGCTTGGTTCGAGCGTTGACAAGCGACACAATGGCACTGCTCAGACTTTGAG
species | Selaginella moellendorffii |
transcript | EFJ13120 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
tcatcaaccttgatctggatcctgagaaggtgaagcaagaactctcctgagccagTAAAATCTGTGGAGCCGCCCCCGTTTCATGTTCTTGGAAATCCAGTCGGGCTTGGTTCGAGCGTTGACAAGCGACACAATGGCACTGCTCAGACTTTGAG
ccttgat putative branch site (score: 5)
ctctcct putative PPT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgtaaagttagccagcgctcacagtcaggtgtgttcatctcccttcatcaaccttgatctggatcctgagaaggtgaagcaagaactctcctgagccagTAAAATCTGTGGAGCCGCCCCCGTTTCATGTTCTTGGAAATCCAGTCGGGCTTGGTTCGAGCGTTGACAAGCGACACAATGGCACTGCTCAGACTTTGAG
- - - - - - ccagcgc
- - - - - - - - - - - - - - - - tgttcat
- - - - - - - - - - - - - - - - - - - - - - - - - - - ttgatct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -tgaagca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - agaactc