1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
gtaagtaatctatatagcatttgtataatcattcatgtggttttcttgttcgtgtagGATACAGAATCCTTGGTGGGAAACGATTCCTGAAAGGCAAAAGCAGTGACCTGATGATACAGCAAAATGCTGACAATACAGAAGACGCTCAAAAGAGTTC
species | Selaginella moellendorffii |
transcript | EFJ13108 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACTAAGTGATCTTCAAGGAGCTGGAAGAAAAGTTGAGCTGGGAGCCACTG GATACAGAATCCTTGGTGGGAAACGATTCCTGAAAGGCAAAAGCAGTGACCEST: gi|169046912|gb|FE455069.1|FE455069
genomic: ACTAAGTGATCTTCAAGGAGCTGGAAGAAAAGTTGAGCTGGGAGCCACTGgtaagtaatc ... gttcgtgtagGATACAGAATCCTTGGTGGGAAACGATTCCTGAAAGGCAAAAGCAGTGACC
EST: CTAAGTGATCTTCAAGGAGTC-GGAAGAAAAGTCGAGCTGGGAGCCACTG GATACAGAATCCTTGGTGGGAAACGATTCCTGAAAGGCAAAAGCAGTGACC
genomic: CTAAGTGATCTTCAAGGAG-CTGGAAGAAAAGTTGAGCTGGGAGCCACTGgtaagtaatc ... gttcgtgtagGATACAGAATCCTTGGTGGGAAACGATTCCTGAAAGGCAAAAGCAGTGACC
aagtaatctatatagcatttgtataatcattcatgtggttttcttgttcgtgtagGATACAGAATCCTTGGTGGGAAACGATTCCTGAAAGGCAAAAGCAGTGACCTGATGATACAGCAAAATGCTGACAATACAGAAGACGCTCAAAAGAGTTC
ttttcttgttc CT-rich tract
atttgtataatcatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagtaatctatatagcatttgtataatcattcatgtggttttcttgttcgtgtagGATACAGAATCCTTGGTGGGAAACGATTCCTGAAAGGCAAAAGCAGTGACCTGATGATACAGCAAAATGCTGACAATACAGAAGACGCTCAAAAGAGTTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG