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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgatcgatcgatcgcaagttcttccatttccaatcgttctttagggctcaaagatttctttcttccttcttgtttctcttccagGACCTTCCTCTCCACCAGCGCGGCGACGCCGTGAGTAGCATGGTCTACGAGGCAAATGCCAGGGTCAGGGATCCGGTCTATGGCTGCGTTGGCGCGATCT

Basic information

species Selaginella moellendorffii
transcript EFJ13084
intron # 1
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ13084 (Selaginella moellendorffii), 3'ss of exon 1
lower sequence: Vv00s0125g00290.t01 (Vitis vinifera), 3'ss of exon 1
gtgatcgatcgatcgcaagt--tcttccatttccaatcgttctttagggctcaa-----agatttctttcttccttcttg-tttctcttc---------cagGACCTTCCTCTCCACCAGCGCGGCGACGCCGTGAGTAGCATGGTCTACGAGGCAAATGCCAGGGTCAGGGATCCGGTCTATGGCTGCGTTGGCGCGATCT
  | | | |     | || |   | | ||  | ||  |  |    |    | ||     | || | |||   | | |  | |||   |||         ||||| || ||  |  | ||| | || || || |||||||||||||| || || |||||||| |||||  |||||||||| ||||| |||||||| || || |
--ggtaggtgtcatgtaactgaccctgcacctgcacccccttggaaaaaataaataaataaatatttttgaacttacaagatttagattcaaatggatgcagGAGCTGCCGGTTGAGCAGAGAGGAGATGCAGTGAGTAGCATGGTGTATGAAGCAAATGCAAGGGTTCGGGATCCGGTTTATGGATGCGTTGGGGCCATTT


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ccaatcgttctttagggctcaaagatttctttcttccttcttgtttctcttccagGACCTTCCTCTCCACCAGCGCGGCGACGCCGTGAGTAGCATGGTCTACGAGGCAAATGCCAGGGTCAGGGATCCGGTCTATGGCTGCGTTGGCGCGATCT
                         tttctttcttccttct  CT-rich tract
                    aaagattt  TA-rich tract