1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtgaggtttccgattgctcgcatcacttcttgattggtttttcttttttccttctgacacagTCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTCGCGGCGGTTCCCGCAATGACAGTGGTGGCTCTGCGCTTCACCCGGACTG
species | Selaginella moellendorffii |
transcript | EFJ13065 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAG TCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTCEST: gi|169105303|gb|FE504013.1|FE504013
genomic: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAGgtgaggtttc ... tctgacacagTCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTC
EST: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAG TCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTCEST: gi|169050548|gb|FE459629.1|FE459629
genomic: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAGgtgaggtttc ... tctgacacagTCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTC
EST: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAG TCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTCEST: gi|169035070|gb|FE445919.1|FE445919
genomic: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAGgtgaggtttc ... tctgacacagTCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTC
EST: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAG TCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTCEST: gi|169050549|gb|FE459630.1|FE459630
genomic: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAGgtgaggtttc ... tctgacacagTCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTC
EST: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAG TCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTC
genomic: ACCAGCCGCCAGTGTCCCTCTCCCGCCTCTCCGCTAGCATGGAAAAGAAGgtgaggtttc ... tctgacacagTCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTC
ttccgattgctcgcatcacttcttgattggtttttcttttttccttctgacacagTCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTCGCGGCGGTTCCCGCAATGACAGTGGTGGCTCTGCGCTTCACCCGGACTG
ttctgac putative branch site (score: 73)
cttcttgattggtttt CT-rich tract
tttttctttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgaggtttccgattgctcgcatcacttcttgattggtttttcttttttccttctgacacagTCGGGAAAGATCGCTGTCCTCGTTGGAACGGTCACCGACGATCCTAGACTCGCGGCGGTTCCCGCAATGACAGTGGTGGCTCTGCGCTTCACCCGGACTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG