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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GACAGGTCTTTCTGAAGTCCGAAGATCTAGACGGCTCACCGTTTCTTTCATATGCACTGTCGCAAACTACGACTATGGCTTCTACTGGCACTTCTACCAGgtagatcaacaagcatcctaacaatccagactatcactaaagctccctacttag

Basic information

species Selaginella moellendorffii
transcript EFJ13052
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ14061 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: GLYMA08G38990.1 (Glycine max), 5'ss of exon 7
GACAGGTCTTTCTGAAGTCCGAAGATCTAGACGGCTCACCGTTTCTTTCATATGCACTGTCGCAAACTACGACTATGGCTTCTACTGGCACTTCTACCAGgtagatcaa-----caagcat---cctaacaatcc-----agactatcactaaagctccc---tacttag------------------------------
 |||||| |  ||||||| ||||| |||||| |||| || |||||||| ||||||||||| || ||||| || ||||| || | ||||||||| || |||| |  | ||     || ||||   |||   | ||      |   |||   || | |   |   || || |                              
AACAGGTTTGGCTGAAGTTCGAAGGTCTAGAAGGCTGACAGTTTCTTTTATATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGgcaagttaaatatccatgcatttacctgtgagtcttttgaatgatattggtagaaccatcaattattttgaggcctagtaatatattcctttcctttaaa

upper sequence: EFJ14061 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: GLYMA06G18810.1 (Glycine max), 5'ss of exon 7
GACAGGTCTTTCTGAAGTCCGAAGATCTAGACGGCTCACCGTTTCTTTCATATGCACTGTCGCAAACTACGACTATGGCTTCTACTGGCACTTCTACCAGgtagatcaacaa--gcatcctaacaatccagactatcactaaagctccctacttag-----------------------------------------------------
           | |||||||||||||||||| | || || |||||||||||||| ||||| || ||||| || ||||| || |  ||||| || || |||| |  |     |   ||||||   ||   | |      || |   |  |   |||                                                      
---------AGCAGAAGTCCGAAGATCTAGAAGACTTACAGTTTCTTTCATATGTACTGTTGCCAACTATGAGTATGGATTTTTTTGGCATTTTTATCAGGCAAGTAGGgtatcacatccttttaagagacaaatatgctgacaatgacattttaaatcaatcttatgttaattattgtaaaattcacaaatatccagtatcttccgac

upper sequence: EFJ14061 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: GLYMA18G20800.1 (Glycine max), 5'ss of exon 7
GACAGGTCTTTCTGAAGTCCGAAGATCTAGACGGCTCACCGTTTCTTTCATATGCACTGTCGCAAACTACGACTATGGCTTCTACTGGCACTTCTACCAGgtagatcaa-----caagcatc---ctaacaatcc-----agactatcactaaagctccctacttag----------------------------------
 |||||  |  ||||||| ||||| |||||| |||| || || ||||| ||||||||||| || ||||| || ||||| || | ||||||||| || |||| |  | ||     |||||||    ||   | ||      |   |||   || | |   | | |                                     
-ACAGGATTGGCTGAAGTTCGAAGGTCTAGAAGGCTGACAGTGTCTTTTATATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTTTATCAGGcaagttaaatatccaagcatttatctgtgagtcagttgaatgatattggtagaaccatcaattatttttaggcctatatacttcctttcttttaaataca

upper sequence: EFJ14061 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: GLYMA02G04360.1 (Glycine max), 5'ss of exon 7
GACAGGTCTTTCTGAAGTCCGAAGATCTAGACGGCTCACCGTTTCTTTCATATGCACTGTCGCAAACTACGACTATGGCTTCTACTGGCACTTCTACCAGgtagatcaacaagcatcctaacaatccagactatcactaaagctccctacttag----------------------------------------------
 |||||| |  ||||||| ||| | |||||| |||| || || ||||| ||||||||||| || ||||| || ||||| || | |||||||||||| |||| |  | |          | |     |||| | |  ||||        |   |                                               
AACAGGTTTGGCTGAAGTTCGACGGTCTAGAAGGCTGACAGTGTCTTTTATATGCACTGTGGCTAACTATGAGTATGGATTTTTCTGGCACTTCTATCAGgcaagttattgtctggattcatccatcagagtttgtctaataagattgatagaatggaaaccatggttgagtcctagtgatatatactttaaaattaaaa

upper sequence: EFJ14061 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: AT2G42490.1 (Arabidopsis thaliana), 5'ss of exon 7
GACAGGTCTTTCTGAAGTCCGAAGATCTAGACGGCTCACCGTTTCTTTCATATGCACTGTCGCAAACTACGACTATGGCTTCTACTGGCACTTCTACCAGgtagatc-aacaagc-atcctaacaatccagactatcactaaagct--ccctacttag------------------------------------------
 |||||  |  | ||||| |||||||||||  | || || || |||||  |||| ||||| || |||||||| ||||| || ||||||||||||||||||||   |  || | |  || ||     ||  || ||   |  |   |   | || ||                                            
AACAGGATTAGCCGAAGTGCGAAGATCTAGGAGACTAACTGTCTCTTTTCTATGTACTGTTGCCAACTACGAGTATGGGTTTTACTGGCACTTCTACCAGgttagtggaatacgtgattcttcatttcttgagtaaagcagatattagtcatatttgcatctaatttctatagggaagacaaatgatgtgtctccgcatg