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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gttttctcctcggttttttttttgtagagGACGGGATCATCCCTGGAAGGATTGTTCCACCCGAGTGTCACGCCGAGGCACACACGGATTACGATGGTGTTGCTGTCCGGTGGGGACTGACTCATCATA

Basic information

species Selaginella moellendorffii
transcript EFJ13039
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ13039 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: PP1S118_115V6.1 (Physcomitrella patens), 3'ss of exon 4
-------------------------------------------------------------------------gttttctcctcggttttttttttgtagagGACGGGATCATCCCTGGAAGGATTGTTCCACCCGAGTGTCACGCCGAGGCACACACGGATTACGATGGTGTTGCTGTCCGGTGGGGACTGACTCATCATA
                                                                         ||      || ||| |    |||  ||||||||    ||| ||||||||     | || || |||||| |||||||||||||||||||||||| ||| || || || ||||||||||| || |||||  
gtacaacgtggaccctgcttgtgaagacccgtcgttgaatcgttgaaatgctttaattgtaagatatcacaaggtgacaatcttggtgtcgggttttcagAGGACGACTCCATACCTGGAAGACCAATGCCGCCGGAGTGTTACGCCGAGGCACACACGGATTACGGTGGAGTAGCGGTTCGGTGGGGACTCACACATCA--

upper sequence: EFJ13039 (Selaginella moellendorffii), 3'ss of exon 5
lower sequence: PP1S172_43V6.1 (Physcomitrella patens), 3'ss of exon 5
--------------------------------------------------------------------gttttctcctcggttttttttt-----tgtagagGACGGGATCATCCCTGGAAGGATTGTTCCACCCGAGTGTCACGCCGAGGCACACACGGATTACGATGGTGTTGCTGTCCGGTGGGGACTGACTCATCATA
                                                                    |||| ||| |    | ||| ||     || ||| || || || || ||||| ||   ||| ||       || || || |||||||| ||||| || ||||||||||| || || ||||| |||||||||||  
gtgatgtcggatatgattttctcaatgcgacatagattgtttcacatgtttgtgatgtttctgttgtggtttgctcattatctgtttattggaggtgcagAAGATGGAATTATTCCTGGGAGACCTGTACCTGAGATATGCCATGCAGAGGCACATACGGACTATGATGGTGTTGCAGTGCGTTGGGGTCTGACTCATCA--


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gttttctcctcggttttttttttgtagagGACGGGATCATCCCTGGAAGGATTGTTCCACCCGAGTGTCACGCCGAGGCACACACGGATTACGATGGTGTTGCTGTCCGGTGGGGACTGACTCATCATA
                                                    ttttctcctcggtttt  CT-rich tract
                                       ttttttttttgtaga  TA-rich tract