1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gttgagatttttgtctttgttttttctttcttccttgttcttttcagtcatgacaagttttctttcggttttagCTGCGCGTACTTTTGCGAAGATTCGTACACGCTCGATCAAGCTGAGGAGGGCATGTTGGAGCTTTACTGTGAAAGAGCACAACTTAAGGACGGGCAAGTG
species | Selaginella moellendorffii |
transcript | EFJ13038 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GTTCCCACCGAGTTTTACAAGCTAGTGCTTGGAAAGCACCTCAAATACAG CTGCGCGTACTTTTGCGAAGATTCGTACACGCTCGATCAAGCTGAGGAGGGEST: gi|169049953|gb|FE458045.1|FE458045
genomic: GTTCCCACCGAGTTTTACAAGCTAGTGCTTGGAAAGCACCTCAAATACAGgttgagattt ... tcggttttagCTGCGCGTACTTTTGCGAAGATTCGTACACGCTCGATCAAGCTGAGGAGGG
EST: GTTCCCACCGAGTTTTACAAGCTAGTGCTTGGAAAGCACCTCAAATACAG CTGCGCGTACTTTTGCGAAGATTCGTACACGCTCGATCAAGCTGAGGAGGG
genomic: GTTCCCACCGAGTTTTACAAGCTAGTGCTTGGAAAGCACCTCAAATACAGgttgagattt ... tcggttttagCTGCGCGTACTTTTGCGAAGATTCGTACACGCTCGATCAAGCTGAGGAGGG
ttttttctttcttccttgttcttttcagtcatgacaagttttctttcggttttagCTGCGCGTACTTTTGCGAAGATTCGTACACGCTCGATCAAGCTGAGGAGGGCATGTTGGAGCTTTACTGTGAAAGAGCACAACTTAAGGACGGGCAAGTG
ttttctttcggtttt CT-rich tract
ttttcttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttgagatttttgtctttgttttttctttcttccttgttcttttcagtcatgacaagttttctttcggttttagCTGCGCGTACTTTTGCGAAGATTCGTACACGCTCGATCAAGCTGAGGAGGGCATGTTGGAGCTTTACTGTGAAAGAGCACAACTTAAGGACGGGCAAGTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA