1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
...tcaagttggagctcaccatggccactggggacgcctaaaactcgccgaaataacacacattactatacctctatgttacaactcttagaaactctgctagATAACGGACCTTTGTACAAAAACGACTTTGGAGCCCAGAGAGCTGACCTTCTACTAA
species | Selaginella moellendorffii |
transcript | EFJ13024 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
cgaaataacacacattactatacctctatgttacaactcttagaaactctgctagATAACGGACCTTTGTACAAAAACGACTTTGGAGCCCAGAGAGCTGACCTTCTACTAA
aaataac putative branch site (score: 2)
ctctgct putative PPT
attactata TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| tcaagttggagctcaccatggccactggggacgcctaaaactcgccgaaataacacacattactatacctctatgttacaactcttagaaactctgctagATAACGGACCTTTGTACAAAAACGACTTTGGAGCCCAGAGAGCTGACCTTCTACTAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGA
- - - -ggagctc
- - - - - - - - - - - - - - - - - - -aaactcg
- - - - - - - - - - - - - - - - - - - - - - - -aaataaca
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ctcttag