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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcctttttctctgtttgttgatgtttttgttccttgactttaagtcagTCACGGTGCCAATGTGATTCGTCGAACGCTAAGTGAACTTTATTCTCAAGCGCATCTATCTTCCAATGGAACGCTTTCTGT

Basic information

species Selaginella moellendorffii
transcript EFJ12996
intron # 6
splice site 3'
intron type U12 (go to U12 genes for details)

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169073474|gb|FE482109.1|FE482109
EST:     GAGCGGAATATGTATGATCAGTTCTGGCTGGAAAAATATCTTCACGAGCT                         TCACGGTGCCAATGTGATTCGTCGAACGCTAAGTGAACTTTATTCTCAAGC
genomic: GAGCGGAATATGTATGATCAGTTCTGGCTGGAAAAATATCTTCACGAGCTgtatcctttt ... tttaagtcagTCACGGTGCCAATGTGATTCGTCGAACGCTAAGTGAACTTTATTCTCAAGC






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatcctttttctctgtttgttgatgtttttgttccttgactttaagtcagTCACGGTGCCAATGTGATTCGTCGAACGCTAAGTGAACTTTATTCTCAAGCGCATCTATCTTCCAATGGAACGCTTTCTGT
    ttccttgac  putative branch site 
                               atgttttt  TA-rich tract