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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TAGCAAATCGCCGCACAGGGACCGCCAGCGCTGGATCCTGGAGCTCATCGCCTATGGCGGCGAGGGATTGTACTACTTCGTGGAACAATTTGTCTGGCTGgtgagttggcatttcctaggattggaatgaaagaaactctcttcgtttctctctcccttttcttccttggcag

Basic information

species Selaginella moellendorffii
transcript EFJ12987
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ12987 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: PP1S84_298V6.1 (Physcomitrella patens), 5'ss of exon 1
TAGCAAATCGCCGCACAGGGACCGCCAGCGCTGGATC-CTGGAGCTCATCGCCTATGGCGGCGAGGGATTGTACTACTTCGTGGAACAATTTGTCTGGCTGgtgagt-----tggcatttcctaggattggaatgaaagaaactctcttcgtttctctctcccttttcttccttggcag----------------------
|   ||   | || ||    ||  | || | ||| |  ||||||||| ||||   ||| || ||||| || |||||||||||||| |||||||||||||||||||||     ||    || ||   |    | || || | || |   |   || |         |  |   ||  ||                       
TCTGAAGAAGACGAACTTCAAC-ACTAGGGATGGTTTTCTGGAGCTCGTCGCAACTGGAGGGGAGGGGTTTTACTACTTCGTGGAGCAATTTGTCTGGCTGgtgagtgtttctgtagattgcttttaactcactggaaaacacacgtgtaaattgttaaattgaatcataaatttacacgcatgtatttgagtacatgtgg