1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gttcgctagaaagcttttggatttcgattgttcttgcgaagtaacatcgctacagGTGGAAGTTCACTATGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGACTGACTGCCTCGCCTCCAGTGGACGTCACGGCGGCCTTTGGCAACAAGG
species | Selaginella moellendorffii |
transcript | EFJ12979 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTTTCGACTGGAAAG GTGGAAGTTCACTACGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGAEST: gi|169062434|gb|FE469493.1|FE469493
genomic: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTCTCGACTGGAAAGgttcgctaga ... atcgctacagGTGGAAGTTCACTATGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGA
EST: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTTTCGACTGGAAAG GTGGAAGTTCACTACGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGAEST: gi|169072840|gb|FE482312.1|FE482312
genomic: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTCTCGACTGGAAAGgttcgctaga ... atcgctacagGTGGAAGTTCACTATGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGA
EST: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTTTCGACTGGAAAG GTGGAAGTTCACTACGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGAEST: gi|169077602|gb|FE484864.1|FE484864
genomic: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTCTCGACTGGAAAGgttcgctaga ... atcgctacagGTGGAAGTTCACTATGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGA
EST: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTTTCGACTGGAAAG GTGGAAGTTCACTACGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGAEST: gi|169068045|gb|FE476412.1|FE476412
genomic: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTCTCGACTGGAAAGgttcgctaga ... atcgctacagGTGGAAGTTCACTATGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGA
EST: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTTTCGACTGGAAAG GTGGAAGTTCACTACGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGAEST: gi|169062435|gb|FE469494.1|FE469494
genomic: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTCTCGACTGGAAAGgttcgctaga ... atcgctacagGTGGAAGTTCACTATGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGA
EST: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTTTCGACTGGAAAG GTGGAAGTTCACTACGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGAEST: gi|169068044|gb|FE476411.1|FE476411
genomic: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTCTCGACTGGAAAGgttcgctaga ... atcgctacagGTGGAAGTTCACTATGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGA
EST: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTTTCGACTGGAAAG GTGGAAGTTCACTACGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGAEST: gi|169034007|gb|FE442767.1|FE442767
genomic: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTCTCGACTGGAAAGgttcgctaga ... atcgctacagGTGGAAGTTCACTATGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGA
EST: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTTTCGACTGGAAAG GTGGAAGTTCACTACGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGAEST: gi|169077603|gb|FE484865.1|FE484865
genomic: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTCTCGACTGGAAAGgttcgctaga ... atcgctacagGTGGAAGTTCACTATGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGA
EST: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTTTCGACTGGAAAG GTGGAAGTTCACTACGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGAEST: gi|169033972|gb|FE442004.1|FE442004
genomic: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTCTCGACTGGAAAGgttcgctaga ... atcgctacagGTGGAAGTTCACTATGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGA
EST: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTTTCGACTGGAAAG GTGGAAGTTCACTACGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGAEST: gi|169114546|gb|FE516616.1|FE516616
genomic: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTCTCGACTGGAAAGgttcgctaga ... atcgctacagGTGGAAGTTCACTATGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGA
EST: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTTTCGACTGGAAAG GTGGAAGTTCACTACGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGA
genomic: GAGTGAAGGCGATCATCGGCGTGAATCTCCCCAACGTCTCGACTGGAAAGgttcgctaga ... atcgctacagGTGGAAGTTCACTATGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGA
gttcgctagaaagcttttggatttcgattgttcttgcgaagtaacatcgctacagGTGGAAGTTCACTATGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGACTGACTGCCTCGCCTCCAGTGGACGTCACGGCGGCCTTTGGCAACAAGG
aagtaac putative branch site (score: 11)
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttcgctagaaagcttttggatttcgattgttcttgcgaagtaacatcgctacagGTGGAAGTTCACTATGTCCACGACAATGTTGGCATCACCAGCGCTGTGGGACTGACTGCCTCGCCTCCAGTGGACGTCACGGCGGCCTTTGGCAACAAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA