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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AACGCGTTGAGGCGTACAATGGAAACTTACTCGAAGGTTACGAGATTTTGCTTCATTTGCAACTACATAAGCAGGCTAgtaattcttttctgtcgag

Basic information

species Selaginella moellendorffii
transcript EFJ12977
intron # 6
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ12977 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: GLYMA04G42550.3 (Glycine max), 5'ss of exon 7
AACGCGTTGAGGCGTACAATGGAAACTTACTCGAAGGTTACGAGATTTTGCTTCATTTGCAACTACATAAGCAGG---CTAgtaattctt--ttctgtcgag------------------------------------------------------------------------
|| ||  ||||||||||||||||||||||||| || ||||| || || |  || || ||||||||  | ||||||   || ||  | | |  || |     |                                                                        
AATGCCCTGAGGCGTACAATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTATGTTAGCAGgtaccttgtcttccgtgcttttactttggtattttactatttttaatgttgtacttgaatctttaaggagctaatgagaattatagttactatgataaca

upper sequence: EFJ12977 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: GLYMA06G12210.1 (Glycine max), 5'ss of exon 7
AACGCGTTGAGGCGTACAATGGAAACTTACTCGAAGGTTACGAGATTTTGCTTCATTTGCAACTACATAAGCAGGCTAgtaattcttttctgtcgag------------------------------------------------------------------------------
|| ||  ||||||||||||||||||||||||| || ||||| || || |  || || ||||||||  | |||||| ||     | ||   ||                                                                                   
AATGCCCTGAGGCGTACAATGGAAACTTACTCTAAAGTTACAAGGTTCTTTTTTATATGCAACTATGTTAGCAGg-taccttcttttccatgcttttacttttggtattttactgtttttaatgttttacttgtatcttttaggagctaatgagaattatagtcaccatgttttg

upper sequence: EFJ12977 (Selaginella moellendorffii), 5'ss of exon 6
lower sequence: Vv18s0001g02090.t01 (Vitis vinifera), 5'ss of exon 6
AACGCGTTGAGGCGTACAATGGAAACTTACTCGAAGGTTACGAGATTTTGCTTCATTTGCAACTACATAAGCAGGCTAgtaattcttttctgtcgag-----------------------------------------------------------------------------
|| || ||||| || ||||||||||| ||||| || ||||| ||||| |  |||||||| |||||||| ||||||   ||   | |||  || |                                                                                
AATGCTTTGAGACGAACAATGGAAACATACTCCAAAGTTACAAGATTCTTTTTCATTTGTAACTACATTAGCAGgtgtgtgtgtttttaatgccacatccttgttttcttatgacatcataaggttatgattggctattttagttatggtaatatagaatttctttagtccatt