1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GGATCAAGCATCAACAATTTTAGTCTCGGCAATAGTTTCTATCCTCTGGTGAATGGAAGGGACATCCCTGCGCCCACGACATCACCCGAAAGgcaagcttgtattgttactctttcttgcttgactggtttttctctttctctcgttgtgcag
species | Selaginella moellendorffii |
transcript | EFJ12969 |
intron # | 6 |
splice site | 5' |
intron type | U2 |
EST: CTGGTGAATGGACGGGACATTCCTGCGAAGCCCACAACTTCACCCGAAAG TGCTATGGGCTGCTCGCCTGGAGCTCTTGATCCTGCCAAAGCCCAGGGAAAEST: gi|169078240|gb|FE487322.1|FE487322
genomic: CTGGTGAATGGAAGGGACATCCCTGC---GCCCACGACATCACCCGAAAGgcaagcttgt ... cgttgtgcagTGCTATGGGCTGCTCGCCTGGAGCTCTTGATCCTGCCAAAGCCCAGGGAAA
EST: CCTCTGGTGAATGGAAGGGACATCCCTGCGCCCACGACATCACCCGAAAG TGCTATGGGCTGCTCGCCTGGAGCTCTTGATCCTGCCAAAGCCCAGGGAAAEST: gi|169044347|gb|FE453285.1|FE453285
genomic: CCTCTGGTGAATGGAAGGGACATCCCTGCGCCCACGACATCACCCGAAAGgcaagcttgt ... cgttgtgcagTGCTATGGGCTGCTCGCCTGGAGCTCTTGATCCTGCCAAAGCCCAGGGAAA
EST: CTGGTGAATGGACGGGACATTCCTGCGAAGCCCACAACTTCACCCGAAAG TGCTATGGGCTGCTCGCCTGGAGCTCTTGATCCTGCCAAAGCCCAGGGAAAEST: gi|169088286|gb|FE492004.1|FE492004
genomic: CTGGTGAATGGAAGGGACATCCCTGC---GCCCACGACATCACCCGAAAGgcaagcttgt ... cgttgtgcagTGCTATGGGCTGCTCGCCTGGAGCTCTTGATCCTGCCAAAGCCCAGGGAAA
EST: CTGGTGAATGGACGGGACATTCCTGCGAAGCCCACAACTTCACCCGAAAG TGCTATGGGCTGCTCGCCTGGAGCTCTTGATCCTGCCAAAGCCCAGGGAAAEST: gi|169104871|gb|FE505414.1|FE505414
genomic: CTGGTGAATGGAAGGGACATCCCTGC---GCCCACGACATCACCCGAAAGgcaagcttgt ... cgttgtgcagTGCTATGGGCTGCTCGCCTGGAGCTCTTGATCCTGCCAAAGCCCAGGGAAA
EST: CCTCTGGTGAATGGAAGGGACATCCCTGCGCCCACGACATCACCCGAAAG TGCTATGGGCTGCTCGCCTGGAGCTCTTGATCCTGCCAAAGCCCAGGGAAAEST: gi|169019530|gb|FE427411.1|FE427411
genomic: CCTCTGGTGAATGGAAGGGACATCCCTGCGCCCACGACATCACCCGAAAGgcaagcttgt ... cgttgtgcagTGCTATGGGCTGCTCGCCTGGAGCTCTTGATCCTGCCAAAGCCCAGGGAAA
EST: CCTCTGGTGAATGGAAGGGACATCCCTGCGCCCACGACATCACCCGAAAG TGCTATGGGCTGCTCGCCTGGAGCTCTTGATCCTGCCAAAGCCCAGGGAAAEST: gi|169110565|gb|FE509282.1|FE509282
genomic: CCTCTGGTGAATGGAAGGGACATCCCTGCGCCCACGACATCACCCGAAAGgcaagcttgt ... cgttgtgcagTGCTATGGGCTGCTCGCCTGGAGCTCTTGATCCTGCCAAAGCCCAGGGAAA
EST: CCTCTGGTGAATGGAAGGGACATCCCTGCGCCCACGACATCACCCGAAAG TGCTATGGGCTGCTCGCCTGGAGCTCTTGATCCTGCCAAAGCCCAGGGAAAEST: gi|169022327|gb|FE431286.1|FE431286
genomic: CCTCTGGTGAATGGAAGGGACATCCCTGCGCCCACGACATCACCCGAAAGgcaagcttgt ... cgttgtgcagTGCTATGGGCTGCTCGCCTGGAGCTCTTGATCCTGCCAAAGCCCAGGGAAA
EST: CTGGTGAATGGACGGGACATTCCTGCGAAGCCCACAACTTCACCCGAAAG TGCTATGGGCTGCTCGCCTGGAGCTCTTGATCCTGCCAAAGCCCAGGGAAA
genomic: CTGGTGAATGGAAGGGACATCCCTGC---GCCCACGACATCACCCGAAAGgcaagcttgt ... cgttgtgcagTGCTATGGGCTGCTCGCCTGGAGCTCTTGATCCTGCCAAAGCCCAGGGAAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATCAAGCATCAACAATTTTAGTCTCGGCAATAGTTTCTATCCTCTGGTGAATGGAAGGGACATCCCTGCGCCCACGACATCACCCGAAAGgcaagcttgtattgttactctttcttgcttgactggtttttctctttctctcgttgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG