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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtatcactctcaattttaagcattgactttgcgagtgctctggtgcgcagGTTCAGCTGTTTGTATCGGGAGTACAAGTACTTCTTCATCGACGATGGCTTAAACATAGAC

Basic information

species Selaginella moellendorffii
transcript EFJ12960
intron # 8
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ12960 (Selaginella moellendorffii), 3'ss of exon 8
lower sequence: PP1S213_114V6.1 (Physcomitrella patens), 3'ss of exon 8
-----------------------------------------------gtatcactctcaatttta-agcat-tgactttgcgagtgc-tctggtgcgcagGTTCAGCTGTTTGTATCGGGAGTACAAGTACTTCTTCATCGACGATGGCTTAAACATAGAC
                                                |  |  | | ||||||| | ||| ||  ||     || | |   | |  ||| ||||| ||| ||||||| || |||||||| |||||||||||||||||  | || || || 
tatagtagtgttttcacagaattctgtatacttgttttcaaatgtcaatgcctatgttaattttataacatatgttttcttcggtacatggagggttcagATTCAGTTGTATGTATCGTGAATACAAGTATTTCTTCATCGACGATGGTCTGAATATTGAT
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169107430|gb|FE504178.1|FE504178
EST:     GATATACGAGTTCTTGGATGGTGTCCTGTTCCTCCTGGATTTCATGCAAG                         GTTCAGCTGTTTGTATCGGGAGTACAAGTACTTCTTCATCGACGATGGCTT
genomic: GATATACGAGTTCTTGGATGGTGTCCTGTTCCTCCTGGATTTCATGCAAGgtatcactct ... tggtgcgcagGTTCAGCTGTTTGTATCGGGAGTACAAGTACTTCTTCATCGACGATGGCTT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtatcactctcaattttaagcattgactttgcgagtgctctggtgcgcagGTTCAGCTGTTTGTATCGGGAGTACAAGTACTTCTTCATCGACGATGGCTTAAACATAGAC
                         cattgac  putative branch site (score: 3)
                   tcaattttaa  TA-rich tract