1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
gtaaatttccttcttttttttcccaataccattgctaaggatctaagtttccagATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACACCCTGAGAAGTCGCGATTGTCCGTGGTTGCGTTTTTTGGGCCTGGAATGG
species | Selaginella moellendorffii |
transcript | EFJ12958 |
intron # | 4 |
splice site | 3' |
intron type | U2 |
EST: TAAAGCCAGTGAAATATGCCTTCGTCGTCAACATTGCTGATCAGTTACAG ATAATGACGAATGCAAAATEST: gi|169101021|gb|FE500934.1|FE500934
genomic: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAGgtaaatttcc ... aagtttccagATAATGACGAATGCAAAAT
EST: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAG ATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACACEST: gi|169098917|gb|FE502314.1|FE502314
genomic: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAGgtaaatttcc ... aagtttccagATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACAC
EST: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAG ATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACACEST: gi|169116346|gb|FE517709.1|FE517709
genomic: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAGgtaaatttcc ... aagtttccagATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACAC
EST: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAG ATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACACEST: gi|169116347|gb|FE517710.1|FE517710
genomic: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAGgtaaatttcc ... aagtttccagATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACAC
EST: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAG ATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACACEST: gi|169109328|gb|FE514091.1|FE514091
genomic: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAGgtaaatttcc ... aagtttccagATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACAC
EST: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAG ATAATGACGAATGCAAAATACAAGAGEST: gi|169045217|gb|FE451450.1|FE451450
genomic: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAGgtaaatttcc ... aagtttccagATAATGACGAATGCAAAATACAAGAG
EST: TAAAGCCAGTGAAATATGCCTTCGTCGTCAACATTGCTGATCAGTTACAG ATAATGACGAATGCAAAATACAAGAGCEST: gi|169042872|gb|FE450497.1|FE450497
genomic: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAGgtaaatttcc ... aagtttccagATAATGACGAATGCAAAATACAAGAGC
EST: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAG ATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACACEST: gi|169098916|gb|FE502313.1|FE502313
genomic: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAGgtaaatttcc ... aagtttccagATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACAC
EST: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAG ATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACACEST: gi|169101022|gb|FE500935.1|FE500935
genomic: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAGgtaaatttcc ... aagtttccagATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACAC
EST: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAG ATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACACEST: gi|169109327|gb|FE514090.1|FE514090
genomic: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAGgtaaatttcc ... aagtttccagATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACAC
EST: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAG ATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACAC
genomic: TAAAGCCAGTGAAAGATGCCTTCGTCGTCAACATTGCTGATCAGTTACAGgtaaatttcc ... aagtttccagATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACAC
gtaaatttccttcttttttttcccaataccattgctaaggatctaagtttccagATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACACCCTGAGAAGTCGCGATTGTCCGTGGTTGCGTTTTTTGGGCCTGGAATGG
tttcc CT-rich tract
ttctttttttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaaatttccttcttttttttcccaataccattgctaaggatctaagtttccagATAATGACGAATGCAAAATACAAGAGCGCCGAGCACCGAGTTCGAGCACACCCTGAGAAGTCGCGATTGTCCGTGGTTGCGTTTTTTGGGCCTGGAATGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT