1 5' 3' | 2 5' 3' | 3 5' 3' |
gtaactcttgcttggtcttcttctttccttctaatactttgtgatgaacaccagATATCTAGTATCAAAGGCGAGAGAGAGGATCTTCGTAAGAAGCTGAGTGAGATCCACGTAAATGGAGCGTTTGCCAAGAAGTTGGAAACTCGTCCAGCGG
species | Selaginella moellendorffii |
transcript | EFJ12282 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: GCGCGATGAGCGAAGAGTTTTCCAAGGAAAAGCAGCTGCTGGATAATGAG ATATCTAGTATCAAAGGCGAGAGAGAGGATCTTCGTAAGAAGCTGAGTGAGEST: gi|169033650|gb|FE441890.1|FE441890
genomic: GCGCGATGAGCGAAGAGTTTTCCAAGGAAAAGCAGCTGCTGGATAATGAGgtaactcttg ... tgaacaccagATATCTAGTATCAAAGGCGAGAGAGAGGATCTTCGTAAGAAGCTGAGTGAG
EST: GCGCGATGAGCGAAGAGTTTTCCAAGGAAAAGCAGCTGCTGGATAATGAG ATATCTAGTATCAAAGGCGAGAGAGAGGATCTTCGTAAGAAGCTGAGTGAGEST: gi|169106118|gb|FE507936.1|FE507936
genomic: GCGCGATGAGCGAAGAGTTTTCCAAGGAAAAGCAGCTGCTGGATAATGAGgtaactcttg ... tgaacaccagATATCTAGTATCAAAGGCGAGAGAGAGGATCTTCGTAAGAAGCTGAGTGAG
EST: GCGCGATGAGCGAAGAGTTTTCCAAGGAAAAGCAGCTGCTGGATAATGAG ATATCTAGTATCAAAGGCGAGAGAGAGGATCTTCGTAAGAAGCTGAGTGAG
genomic: GCGCGATGAGCGAAGAGTTTTCCAAGGAAAAGCAGCTGCTGGATAATGAGgtaactcttg ... tgaacaccagATATCTAGTATCAAAGGCGAGAGAGAGGATCTTCGTAAGAAGCTGAGTGAG
gtaactcttgcttggtcttcttctttccttctaatactttgtgatgaacaccagATATCTAGTATCAAAGGCGAGAGAGAGGATCTTCGTAAGAAGCTGAGTGAGATCCACGTAAATGGAGCGTTTGCCAAGAAGTTGGAAACTCGTCCAGCGG
ttctaat putative branch site (score: 5)
taatacttt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaactcttgcttggtcttcttctttccttctaatactttgtgatgaacaccagATATCTAGTATCAAAGGCGAGAGAGAGGATCTTCGTAAGAAGCTGAGTGAGATCCACGTAAATGGAGCGTTTGCCAAGAAGTTGGAAACTCGTCCAGCGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT