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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTCTTTCATTTTGATGTTCATGAGGACATACGCACAATTGCTGACGCCACAATTGAGAAGGACGATGTACCTTGTGTATATCAGTTTTGTATGCCAGTTGgtgatgctttgctcattcccacgctggtaaggttgtggag

Basic information

species Selaginella moellendorffii
transcript EFJ12236
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ12236 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA08G04680.2 (Glycine max), 5'ss of exon 9
CTCTTTCATTTTGATGTTCATGAGGACATACGCACAATTGCTGACGCCACAATTGAGAAGGACGATGTACCTTGTGTATATCAGTTTTGTATGCCAGT-TGgtgatgctttgctcattcccacgctggtaaggttgtggag------------------------------------------------------------------------------------
|| |||||||||||||| ||||||||  |||| ||||||||||| ||||| || |||||||| || |||   | | |   | | | ||   ||| ||| |  |  |  |||    ||   || | |   ||| |   | |                                                                                     
CTTTTTCATTTTGATGTGCATGAGGATGTACGAACAATTGCTGATGCCACTATAGAGAAGGATGAGgtatactttcttcctaattattac-tgctagtctactactattttcaaaatctacatgtt--caagataacgaaaacaagtgtgcatattgtcttttctagtaaacttatgggtttttgcttaattatcttactctggtgatcttgtctcaaccaacag

upper sequence: EFJ12236 (Selaginella moellendorffii), 5'ss of exon 1
lower sequence: GLYMA05G35040.1 (Glycine max), 5'ss of exon 10
CTCTTTCATTTTGATGTTCATGAGGACATACGCACAATTGCTGACGCCACAATTGAGAAGGACGATGTACCTTGTGTATATCAGTTTTGTATGCCAGT-TGgtgatgctttgctcattcccacgctggtaaggttgtggag--------------------------------------------------------------------------------------
|| |||||||| ||||| ||||||||  |||| ||||||||||| ||||| || |||||||| || |||   | | |   | | | ||   ||| ||| |  |  |  |||    ||    | | |   ||| |  || |                                                                                       
CTTTTTCATTTCGATGTGCATGAGGATGTACGAACAATTGCTGATGCCACTATAGAGAAGGATGAGgtatactttattcctaattattac-tgctagtctactactattttcaaaatctaaatgtta--aagataatgaaaacaagtgtgcatatttgtcttttctggtaaacttctgggttttttgcttaattatcttactctgatgatattgtctcaaccaacag