Sequence
atgc intronic sequence ATGC exonic sequencegtaagtttctcttggtcaaatttgttctttaatgctgggatgaatcccacagGATGTGTTGATGGGTGCTGTGGATACTTCGGCTCTCTCGCTGGAATGGGCCATGGCCGAGCTTCTCCGGCATCCAGCCGAATTCTCAAGAGTTCAGAGCC
Basic information
species | Selaginella moellendorffii |
transcript | EFJ11282 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|169020832|gb|FE431949.1|FE431949EST: AAATCACACTTTTGCTT GATGTGTTGATGGGTGCTGTGGATACTTCGGCTCTCTCGCTGGAATGGGCC
genomic: AAATCACACTTTTGCTTgtaagtttct ... aatcccacagGATGTGTTGATGGGTGCTGTGGATACTTCGGCTCTCTCGCTGGAATGGGCC
EST:
gi|169020833|gb|FE431950.1|FE431950EST: TCTCCATGGGAGAGAAGCTCTCTGACACCACCAAAATCACACTTTTGCTT GATGTGTTGATGGGTGCTGTGGATACTTCGGCTCTCTCGCTGGAATGGGCC
genomic: TCTCCATGGGAGAGAAGCTCTCTGACACCACCAAAATCACACTTTTGCTTgtaagtttct ... aatcccacagGATGTGTTGATGGGTGCTGTGGATACTTCGGCTCTCTCGCTGGAATGGGCC
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.gtaagtttctcttggtcaaatttgttctttaatgctgggatgaatcccacagGATGTGTTGATGGGTGCTGTGGATACTTCGGCTCTCTCGCTGGAATGGGCCATGGCCGAGCTTCTCCGGCATCCAGCCGAATTCTCAAGAGTTCAGAGCC
ctttaat putative branch site (score: 4)
aaatttgttctttaat TA-rich tract
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaagtttctcttggtcaaatttgttctttaatgctgggatgaatcccacagGATGTGTTGATGGGTGCTGTGGATACTTCGGCTCTCTCGCTGGAATGGGCCATGGCCGAGCTTCTCCGGCATCCAGCCGAATTCTCAAGAGTTCAGAGCC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT