1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaggctcctttcggtttttcttcttctagaactagaaaaccgaaaggacttgattctaatgcacgtctctcacagATTGGAGATTTCCTAGACGTAGCGATTCTTTGAGCGAGGTGGCTTTGTACGATATCTCAGCAGCTTGACAGAAGAGGTATCCAAGTTGATATTTCAGTTT
species | Selaginella moellendorffii |
transcript | EFJ11264 |
intron # | 5 |
splice site | 3' |
intron type | U2 |
EST: TGAGGCGAGGCCACGACGATGACAAGATGCTCCAGGATCTCGGGTTTCAG ATTGGAGATTTCCTAGACGTAGCGATTCTTTGAGCGAGGTGGCTTTGTACGEST: gi|169083327|gb|FE491371.1|FE491371
genomic: TGAGGCGAGGCCACGACGATGACAAGATGCTCCAGGATCTCGGGTTTCAGgtaggctcct ... tctctcacagATTGGAGATTTCCTAGACGTAGCGATTCTTTGAGCGAGGTGGCTTTGTACG
EST: TGAGGCGAGGCCACGAGGATGACAAGATGCTCCAGGATCTCGGGTTTCAG ATTGGAGATTTCCTAGACGTAGCGATTCTTTGAGCGAGTTGGCTTTGTACGEST: gi|169099673|gb|FE503070.1|FE503070
genomic: TGAGGCGAGGCCACGACGATGACAAGATGCTCCAGGATCTCGGGTTTCAGgtaggctcct ... tctctcacagATTGGAGATTTCCTAGACGTAGCGATTCTTTGAGCGAGGTGGCTTTGTACG
EST: TGAGGCGAGGCCACGACGATGACAAGATGCTCCAGGATCTCGGGTTTCAG ATTGGAGATTTCCTAGACGTAGCGATTCTTTGAGCGAGGTGGCTTTGTACGEST: gi|169036678|gb|FE446576.1|FE446576
genomic: TGAGGCGAGGCCACGACGATGACAAGATGCTCCAGGATCTCGGGTTTCAGgtaggctcct ... tctctcacagATTGGAGATTTCCTAGACGTAGCGATTCTTTGAGCGAGGTGGCTTTGTACG
EST: TGAGGCGAGGCCACGACGATGACAAGATGCTCCAGGATCTCGGGTTTCAG ATTGGAGATTTCCTAGACGTAGCGATTCTTTGAGCGAGGTGGCTTTGTACGEST: gi|169083326|gb|FE491370.1|FE491370
genomic: TGAGGCGAGGCCACGACGATGACAAGATGCTCCAGGATCTCGGGTTTCAGgtaggctcct ... tctctcacagATTGGAGATTTCCTAGACGTAGCGATTCTTTGAGCGAGGTGGCTTTGTACG
EST: TGAGGCGAGGCCACGAGGATGACAAGATGCTCCAGGATCTCGGGTTTCAG ATTGGAGATTTCCTAGACGTAGCGATTCTTTGAGCGAGTTGGCTTTGTACG
genomic: TGAGGCGAGGCCACGACGATGACAAGATGCTCCAGGATCTCGGGTTTCAGgtaggctcct ... tctctcacagATTGGAGATTTCCTAGACGTAGCGATTCTTTGAGCGAGGTGGCTTTGTACG
ttcttctagaactagaaaaccgaaaggacttgattctaatgcacgtctctcacagATTGGAGATTTCCTAGACGTAGCGATTCTTTGAGCGAGGTGGCTTTGTACGATATCTCAGCAGCTTGACAGAAGAGGTATCCAAGTTGATATTTCAGTTT
ttctaat putative branch site (score: 38)
cgtctctc putative PPT
attctaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaggctcctttcggtttttcttcttctagaactagaaaaccgaaaggacttgattctaatgcacgtctctcacagATTGGAGATTTCCTAGACGTAGCGATTCTTTGAGCGAGGTGGCTTTGTACGATATCTCAGCAGCTTGACAGAAGAGGTATCCAAGTTGATATTTCAGTTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG