1 5' 3' | 2 5' 3' | 3 5' 3' |
gtcgagtacatcttcttctttcgtggtttcttcgactaaagctttttgttgttctatcagGTGTCCTTTAGAACCAAGGTTTTCCATCCAAACATCAACAGCAATGGAAGCATTTGCTTGGACATCCTCAAGGAGCAGTGGAGCCCCGCATTGACGATCT
species | Selaginella moellendorffii |
transcript | EFJ11260 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TCTTGGTCACCATCCATTTTCCTCCCGATTATCCATTCAAGCCTCCCAAG GTGTCCTTTAGAACCAAGGTTTTCCATCCAAACATCAACAGCAATGGAAGCEST: gi|169094674|gb|FE492487.1|FE492487
genomic: TCTTGGTCACCATCCATTTTCCTCCCGATTATCCATTCAAGCCTCCCAAGgtcgagtaca ... gttctatcagGTGTCCTTTAGAACCAAGGTTTTCCATCCAAACATCAACAGCAATGGAAGC
EST: TCTTGGTCACCATCCATTTTCCTCCCGATTATCCATTCAAGCCTCCCAAG GTGTCCTTTAGAACCAAGGTTTTCCATCCAAACATCAACAGCAATGGAAGCEST: gi|169075790|gb|FE480928.1|FE480928
genomic: TCTTGGTCACCATCCATTTTCCTCCCGATTATCCATTCAAGCCTCCCAAGgtcgagtaca ... gttctatcagGTGTCCTTTAGAACCAAGGTTTTCCATCCAAACATCAACAGCAATGGAAGC
EST: TCTTGGTCACCATCCATTTTCCTCCCGATTATCCATTCAAGCCTCCCAAG GTGTCCTTTAGAACCAAGGTTTTCCATCCAAACATCAACAGCAATGGAAGCEST: gi|70669193|gb|DN837770.1|DN837770
genomic: TCTTGGTCACCATCCATTTTCCTCCCGATTATCCATTCAAGCCTCCCAAGgtcgagtaca ... gttctatcagGTGTCCTTTAGAACCAAGGTTTTCCATCCAAACATCAACAGCAATGGAAGC
EST: TCTTGGTCACCATCCATTTTCCTCCCGATTATCCATTCAAGCCTCCCAAG GTGTCCTTTAGAACCAAGGTTTTCCATCCAAACATCAACAGCAATGGAAGCEST: gi|169051150|gb|FE460244.1|FE460244
genomic: TCTTGGTCACCATCCATTTTCCTCCCGATTATCCATTCAAGCCTCCCAAGgtcgagtaca ... gttctatcagGTGTCCTTTAGAACCAAGGTTTTCCATCCAAACATCAACAGCAATGGAAGC
EST: TTTTGGTCACCATCCATTTTCCTCCCGATTATCCATTCAAGCCTCCCAAG GTGTCCTTTAGAACCAAGGTTTTCCATCCAAACATCAACAGCAATGGAAGCEST: gi|169075789|gb|FE480927.1|FE480927
genomic: TCTTGGTCACCATCCATTTTCCTCCCGATTATCCATTCAAGCCTCCCAAGgtcgagtaca ... gttctatcagGTGTCCTTTAGAACCAAGGTTTTCCATCCAAACATCAACAGCAATGGAAGC
EST: TCTTGGTCACCATCCATTTTCCTCCCGATTATCCATTCAAGCCTCCCAAG GTGTCCTTTAGAACCAAGGTTTTCCATCCAAACATCAACAGCAATGGAAGC
genomic: TCTTGGTCACCATCCATTTTCCTCCCGATTATCCATTCAAGCCTCCCAAGgtcgagtaca ... gttctatcagGTGTCCTTTAGAACCAAGGTTTTCCATCCAAACATCAACAGCAATGGAAGC
gtacatcttcttctttcgtggtttcttcgactaaagctttttgttgttctatcagGTGTCCTTTAGAACCAAGGTTTTCCATCCAAACATCAACAGCAATGGAAGCATTTGCTTGGACATCCTCAAGGAGCAGTGGAGCCCCGCATTGACGATCT
gactaaa putative branch site (score: 63)
ctttttgttgttct CT-rich tract
tttttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtcgagtacatcttcttctttcgtggtttcttcgactaaagctttttgttgttctatcagGTGTCCTTTAGAACCAAGGTTTTCCATCCAAACATCAACAGCAATGGAAGCATTTGCTTGGACATCCTCAAGGAGCAGTGGAGCCCCGCATTGACGATCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG