1 5' 3' | 2 5' 3' | 3 5' 3' |
gtagaagcaaaaggcatgtgacttctttatttacaaattaactctattctattttttttccagGTTTATTCCTAGAACTACCATGCTCTATGCCACATTGGGAATTGGCATAATGCCACACGAGCTAACGAGTGTGCTGCTCTTGCTTTACCAGGATATGACA
species | Selaginella moellendorffii |
transcript | EFJ11255 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
aaaaggcatgtgacttctttatttacaaattaactctattctattttttttccagGTTTATTCCTAGAACTACCATGCTCTATGCCACATTGGGAATTGGCATAATGCCACACGAGCTAACGAGTGTGCTGCTCTTGCTTTACCAGGATATGACA
aattaac putative branch site (score: 2)
ctctattctatttttt CT-rich tract
ttctttatttacaaat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtagaagcaaaaggcatgtgacttctttatttacaaattaactctattctattttttttccagGTTTATTCCTAGAACTACCATGCTCTATGCCACATTGGGAATTGGCATAATGCCACACGAGCTAACGAGTGTGCTGCTCTTGCTTTACCAGGATATGACA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT