1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
gtaagacgtgacttcgctttagttctcggttgaaacttcttttctggtttacttccagCTCCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAATGGAAGGAGTCGGAGTACTCGCACAGTGGTCAGCTTGTGCCTGTTGGAG
species | Selaginella moellendorffii |
transcript | EFJ11193 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
EST: CTATCATTCTCCAGTCGGCGCTCGTCTCGAACTTGTACTTCATCTCTCAG CTCCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAAEST: gi|169100433|gb|FE501321.1|FE501321
genomic: CTATCATTCTCCAGTCGGCGCTCGTCTCGAACTTGTACTTCATCTCTCAGgtaagacgtg ... ttacttccagCTCCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAA
EST: CTATCATTCTCCAGTCGGCGCTCGTCTCGAACTTGTACTTCATCTCTCAG CTCCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAAEST: gi|169107728|gb|FE510944.1|FE510944
genomic: CTATCATTCTCCAGTCGGCGCTCGTCTCGAACTTGTACTTCATCTCTCAGgtaagacgtg ... ttacttccagCTCCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAA
EST: CTATCATTCTCCAGTCGGCGCTCGTCTCGAACTTGTACTTCATCTCTCAG CTCCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAA
genomic: CTATCATTCTCCAGTCGGCGCTCGTCTCGAACTTGTACTTCATCTCTCAGgtaagacgtg ... ttacttccagCTCCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAA
agacgtgacttcgctttagttctcggttgaaacttcttttctggtttacttccagCTCCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAATGGAAGGAGTCGGAGTACTCGCACAGTGGTCAGCTTGTGCCTGTTGGAG
cttcttttctggttta CT-rich tract
tttagtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagacgtgacttcgctttagttctcggttgaaacttcttttctggtttacttccagCTCCTGTATAGGAGGTACAGCACAAACCTTCTCGTGAATCTCTTGGGCCAATGGAAGGAGTCGGAGTACTCGCACAGTGGTCAGCTTGTGCCTGTTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG