1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
gtaacacactttccgctatcaactctataattgacgactttaatttgttgtgcccagAGTTTACCACCATGGCTGGACGACGCTTGAAAGATGCAGTGAAGGCTACCTTGGTCGAGAAGAGCAACGGAAAGTATGACAAAGAAGTTCGGATTGTTAT
species | Selaginella moellendorffii |
transcript | EFJ09250 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: AATCCAGATCCTCCAAGTTGGCCAACTCTTCATTTTATCAGTTCCTTCTG AGTTTACCACCATGGCTGGACGACGCTTGAAAGATGCAGTGAAGGCTACCTEST: gi|169026859|gb|FE434223.1|FE434223
genomic: AATCCAGATCCTCCAAGTTGGCCAACTCTTCATTTTATCAGTTCCTTCTGgtaacacact ... ttgtgcccagAGTTTACCACCATGGCTGGACGACGCTTGAAAGATGCAGTGAAGGCTACCT
EST: ATCCAGATCCTCCAAGTTGGCCAACTCTTCATTTTATCAGTTCCTTCTG AGTTTACCACCATGGCTGGACGACGCTTGAAAGATGCAGTGAAGGCTACCT
genomic: ATCCAGATCCTCCAAGTTGGCCAACTCTTCATTTTATCAGTTCCTTCTGgtaacacact ... ttgtgcccagAGTTTACCACCATGGCTGGACGACGCTTGAAAGATGCAGTGAAGGCTACCT
aacacactttccgctatcaactctataattgacgactttaatttgttgtgcccagAGTTTACCACCATGGCTGGACGACGCTTGAAAGATGCAGTGAAGGCTACCTTGGTCGAGAAGAGCAACGGAAAGTATGACAAAGAAGTTCGGATTGTTAT
tttaatttgtt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaacacactttccgctatcaactctataattgacgactttaatttgttgtgcccagAGTTTACCACCATGGCTGGACGACGCTTGAAAGATGCAGTGAAGGCTACCTTGGTCGAGAAGAGCAACGGAAAGTATGACAAAGAAGTTCGGATTGTTAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGT