1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
AAACCCAGAGACCGAGCGGCCATTCACGATAAGTATGATCGAGCGTTTCATGCGTGAAGTTCACTTTGCTGTTGATCCAAACAGATCCTCGAAGAAGCAGgtatcggcgatggatgttcttcagtttcttggttcttactttcgtggttttgccag
species | Selaginella moellendorffii |
transcript | EFJ09245 |
intron # | 3 |
splice site | 5' |
intron type | U2 |
EST: TGCGTGAAGTTCACTTTGCTGTTGATCCAAACAGATCCTCCAAGAAGCAG GCTTTGGAGCTTATCAGGGAGCTACAATCGCATTTCCCGATCACAAGAGCGEST: gi|169075297|gb|FE483555.1|FE483555
genomic: TGCGTGAAGTTCACTTTGCTGTTGATCCAAACAGATCCTCGAAGAAGCAGgtatcggcga ... gttttgccagGCTTTGGAGCTTATCAGGGAGCTACAATCGCATTTCCCGATCACAAGAGCG
EST: TGCGTGAAGTTCACTTTGCTGTTGATCCAAACAGATCCTCCAAGAAGCAG GCTTTGGAGCTTATCAGGGAGCTACAATCGCATTTCCCGATCACAAGAGCGEST: gi|169073362|gb|FE481113.1|FE481113
genomic: TGCGTGAAGTTCACTTTGCTGTTGATCCAAACAGATCCTCGAAGAAGCAGgtatcggcga ... gttttgccagGCTTTGGAGCTTATCAGGGAGCTACAATCGCATTTCCCGATCACAAGAGCG
EST: TGCGTGAAGTTCACTTTGCTGTTGATCCAAACAGATCCTCCAAGAAGCAG GCTTTGGAGCTTATCAGGGAGCTACAATCGCATTTCCCGATCACAAGAGCGEST: gi|169073363|gb|FE481114.1|FE481114
genomic: TGCGTGAAGTTCACTTTGCTGTTGATCCAAACAGATCCTCGAAGAAGCAGgtatcggcga ... gttttgccagGCTTTGGAGCTTATCAGGGAGCTACAATCGCATTTCCCGATCACAAGAGCG
EST: TGCGTGAAGTTCACTTTGCTGTTGATCCAAACAGATCCTCCAAGAAGCAG GCTTTGGAGCTTATCAGGGAGCTACAATCGCATTTCCCGATCACAAGAGCG
genomic: TGCGTGAAGTTCACTTTGCTGTTGATCCAAACAGATCCTCGAAGAAGCAGgtatcggcga ... gttttgccagGCTTTGGAGCTTATCAGGGAGCTACAATCGCATTTCCCGATCACAAGAGCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAACCCAGAGACCGAGCGGCCATTCACGATAAGTATGATCGAGCGTTTCATGCGTGAAGTTCACTTTGCTGTTGATCCAAACAGATCCTCGAAGAAGCAGgtatcggcgatggatgttcttcagtttcttggttcttactttcgtggttttgccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAAGC