1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
gtaagatccgtgtttgattttaaaaggtatatgaatcgattgagtgggcgatcgcctcgcagGCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAGAAGATGAAGAACAATCCACAACTCTCCTACGACGAAACTGTTCAA
species | Selaginella moellendorffii |
transcript | EFJ09222 |
intron # | 6 |
splice site | 3' |
intron type | U2 |
EST: GCCCACAGCTTTTCAAGTGCGACCCGGCTGGTCACTATGTTGGCTACAGA GCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAGEST: gi|169064643|gb|FE471374.1|FE471374
genomic: GCCCACAGCTTTTCAAGTGCGACCCGGCTGGTCACTATGTTGGCTACAGAgtaagatccg ... cgcctcgcagGCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAG
EST: GCCCACAGCTTTTCAAGTGCGACCCGGCTGGTCACTATGTTGGCTACAGA GCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAGEST: gi|70670234|gb|DN838811.1|DN838811
genomic: GCCCACAGCTTTTCAAGTGCGACCCGGCTGGTCACTATGTTGGCTACAGAgtaagatccg ... cgcctcgcagGCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAG
EST: GCCCACAGCTTTTCAAGTGCGACCCGGCTGGTCACTATGTTGGCTACAGA GCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCGACATTCTGGAGAAGEST: gi|169048167|gb|FE455439.1|FE455439
genomic: GCCCACAGCTTTTCAAGTGCGACCCGGCTGGTCACTATGTTGGCTACAGAgtaagatccg ... cgcctcgcagGCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAG
EST: GCCCACAGCTTTTCAAGTGCGACCCGGCTGGTCACTATGTTGGCTACAGA GCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAGEST: gi|169050807|gb|FE459953.1|FE459953
genomic: GCCCACAGCTTTTCAAGTGCGACCCGGCTGGTCACTATGTTGGCTACAGAgtaagatccg ... cgcctcgcagGCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAG
EST: GCCCACAGCTTTTCAAGTGCGACCCGGCTGGTCACTATGTTGGCTACAGA GCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAGEST: gi|169113459|gb|FE514994.1|FE514994
genomic: GCCCACAGCTTTTCAAGTGCGACCCGGCTGGTCACTATGTTGGCTACAGAgtaagatccg ... cgcctcgcagGCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAG
EST: GCCCACAGCTTTTCAAGTGCGACCCGGCTGGTCACTATGTTGGCTACAGA GCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAGEST: gi|169113460|gb|FE514995.1|FE514995
genomic: GCCCACAGCTTTTCAAGTGCGACCCGGCTGGTCACTATGTTGGCTACAGAgtaagatccg ... cgcctcgcagGCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAG
EST: GCCCACAGCTTTTCAAGTGCGACCCGGCTGGTCACTATGTTGGCTACAGA GCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAGEST: gi|169064642|gb|FE471373.1|FE471373
genomic: GCCCACAGCTTTTCAAGTGCGACCCGGCTGGTCACTATGTTGGCTACAGAgtaagatccg ... cgcctcgcagGCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAG
EST: GCCCACAGCTTTTCAAGTGCGACCCGGCTGGTCACTATGTTGGCTACAGA GCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAG
genomic: GCCCACAGCTTTTCAAGTGCGACCCGGCTGGTCACTATGTTGGCTACAGAgtaagatccg ... cgcctcgcagGCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAG
ccgtgtttgattttaaaaggtatatgaatcgattgagtgggcgatcgcctcgcagGCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAGAAGATGAAGAACAATCCACAACTCTCCTACGACGAAACTGTTCAA
gtttgat putative branch site (score: 46)
tcgcctc putative PPT
attttaaaaggtatat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtaagatccgtgtttgattttaaaaggtatatgaatcgattgagtgggcgatcgcctcgcagGCCACTAGCGCGGGTTTGAAAGAGCAGGAGGCTGTCAACATTCTGGAGAAGAAGATGAAGAACAATCCACAACTCTCCTACGACGAAACTGTTCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAC