1 5' 3' | 2 5' 3' | 3 5' 3' |
TTTGGGATTCCACTTCACTGCTCCTTCCTGACTTAGTGGAGATCTAACTCAGAGATGGGGTCTCTCATGGCTGGCTGGAACTCTCCTCGCACCAAGAAAAgtaagtgatttttactgccgtatcgccttgtcctcagaagccgggatgttttggacag
species | Selaginella moellendorffii |
transcript | EFJ09219 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGAGATGGGGTCTCTCATGGCTGGCTGGAACTCTCCTCGCACCAAGAAAA GATTTGAGCGAAACTTGTCCCTCACCAAAGAGGAAATTGACTCCTACTGGCEST: gi|169040498|gb|FE449213.1|FE449213
genomic: AGAGATGGGGTCTCTCATGGCTGGCTGGAACTCTCCTCGCACCAAGAAAAgtaagtgatt ... ttttggacagGATTTGAGCGAAACTTGTCCCTCACCAAAGAGGAAATTGACTCCTACTGGC
EST: AGAGATGGGGTCTCTCATGGCTGGCTGGAACTCTCCTCGCACCAAGAAAA GATTTGAGCGAAACTTGTCCCTCACCAAAGAGGAAATTGACTCCTACTGGCEST: gi|169067849|gb|FE473407.1|FE473407
genomic: AGAGATGGGGTCTCTCATGGCTGGCTGGAACTCTCCTCGCACCAAGAAAAgtaagtgatt ... ttttggacagGATTTGAGCGAAACTTGTCCCTCACCAAAGAGGAAATTGACTCCTACTGGC
EST: AGAGATGGGGTCTCTCATGGCTGGCTGGAACTCTCCTCGCACCAAGAAAA GATTTGAGCGAAACTTGTCCCTCACCAAAGAGGAAATTGACTCCTACTGGCEST: gi|169067848|gb|FE473406.1|FE473406
genomic: AGAGATGGGGTCTCTCATGGCTGGCTGGAACTCTCCTCGCACCAAGAAAAgtaagtgatt ... ttttggacagGATTTGAGCGAAACTTGTCCCTCACCAAAGAGGAAATTGACTCCTACTGGC
EST: CATGGCTGGCTGGAACTCTCCTCGCACCAAGAAAA GATTTGAGCGAAACTTGTCCCTCACCAAAGAGGAAATTGACTCCTACTGGC
genomic: CATGGCTGGCTGGAACTCTCCTCGCACCAAGAAAAgtaagtgatt ... ttttggacagGATTTGAGCGAAACTTGTCCCTCACCAAAGAGGAAATTGACTCCTACTGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TTTGGGATTCCACTTCACTGCTCCTTCCTGACTTAGTGGAGATCTAACTCAGAGATGGGGTCTCTCATGGCTGGCTGGAACTCTCCTCGCACCAAGAAAAgtaagtgatttttactgccgtatcgccttgtcctcagaagccgggatgttttggacag
- - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA