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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagcccaagatgaaagaaccaaagatcttggactagtacatgatgtgacctttctttgttcttgccagAGGATGGTGATTCGCACCAAGAATGTGGAGTTTATGCCCATCACGCTCTCGGCCTTTCTCGCCGTCAATGCTTCGCTCTGGTCGGCCTATTCCTTCTTCT

Basic information

species Selaginella moellendorffii
transcript EFJ09168
intron # 3
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ09168 (Selaginella moellendorffii), 3'ss of exon 3
lower sequence: GLYMA05G25180.1 (Glycine max), 3'ss of exon 2
----------------------gtaagcc-caagatgaaagaaccaaagat---cttggactagtacatgatgtgacct--ttctttgttcttgccagAGGAT--GGTGATTCGCACCAAGAATGTGGAGTTTATGCCCATCACGCTCTCGGCCTTTCTCGCCGTCAATGCTTCGCTCTGGTCGGCCTATTCCTTCTTCT
                       ||||    ||  |       | ||  ||   |||  ||| | ||    | | |  |  ||  ||| |||      ||| |  ||| ||||| |||||||||||||||||||||||  | |   | ||    || ||| || | | |||     | ||||    ||||    | ||  
ttgagaccagagacgtctgaaactaagtaataatttctccattctaagcatttacttttacttgcactctttatcaattgatttcttgatctgcatgcagGCTCAGGTTATTCGAACCAAGAATGTGGAGTTTATGCCGTTTAACTTGTCACTTTTCCTCACCATAAGTGCCGTAATGTGGTTTTTCTATGGTCTTTTAC


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

aagaaccaaagatcttggactagtacatgatgtgacctttctttgttcttgccagAGGATGGTGATTCGCACCAAGAATGTGGAGTTTATGCCCATCACGCTCTCGGCCTTTCTCGCCGTCAATGCTTCGCTCTGGTCGGCCTATTCCTTCTTCT
                                   cctttctttgttcttg  CT-rich tract
                                     tttcttt  TA-rich tract