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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gcaagcaatcttctaagtgttttatgtgtcttatattttgtcatagGTGCTCGCTGTGTGGCAACGCTCCTCCATGAAATGGCCAAGCGTGGGTCCGCTTGTAGATACGGAGTGGTCTCTATGTGCATAG

Basic information

species Selaginella moellendorffii
transcript EFJ09160
intron # 10
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169022526|gb|FE429410.1|FE429410
EST:     GAATGTGAATGGTGGTGCAATCGCGCTTGGCCACCCTCTCGGTGCAACAG                         GTGCTCGCTGTGTGGCAACGCTCCTCCATGAAATGGCCAAGCGTGGGTCCG
genomic: GAATGTGAATGGTGGTGCAATCGCGCTTGGCCACCCTCTCGGTGCAACAGgcaagcaatc ... tttgtcatagGTGCTCGCTGTGTGGCAACGCTCCTCCATGAAATGGCCAAGCGTGGGTCCG






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gcaagcaatcttctaagtgttttatgtgtcttatattttgtcatagGTGCTCGCTGTGTGGCAACGCTCCTCCATGAAATGGCCAAGCGTGGGTCCGCTTGTAGATACGGAGTGGTCTCTATGTGCATAG
                                                    ttttgtc  CT-rich tract
                                       ttatattttgtcata  TA-rich tract