Sequence
atgc intronic sequence ATGC exonic sequencegtaatagcttgatggttcttcctttttgtccttctcattttcagccaagccggatgttgaagatctcctcaccaagCTGCTAAGCAAATACGCCAGCCAAGATAGCAAAGAGCTCGGGCAAACCCAGTTCGCCAAGCTGCTCCAAGACGTTCTCCAGGATCTCTCCGAGACTCTGG
Basic information
| species | Selaginella moellendorffii |
| transcript | EFJ07678 |
| intron # | 1 |
| splice site | 3' |
| intron type | U2 |
atgc intronic sequence ATGC exonic sequenceIntronic sequence truncated to 55 bases.ctttttgtccttctcattttcagccaagccggatgttgaagatctcctcaccaagCTGCTAAGCAAATACGCCAGCCAAGATAGCAAAGAGCTCGGGCAAACCCAGTTCGCCAAGCTGCTCCAAGACGTTCTCCAGGATCTCTCCGAGACTCTGG
tcctcac putative branch site (score: 2)
tctcctcacc CT-rich tract
tcatttt TA-rich tract
Putative cis-regulatory sequences
| atgc | intron | ATGC | exonic elements by Pertea et al. |
| ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gtaatagcttgatggttcttcctttttgtccttctcattttcagccaagccggatgttgaagatctcctcaccaagCTGCTAAGCAAATACGCCAGCCAAGATAGCAAAGAGCTCGGGCAAACCCAGTTCGCCAAGCTGCTCCAAGACGTTCTCCAGGATCTCTCCGAGACTCTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
