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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagccttttgtatgtcatattggttgaacgatctctttgtcgttgtctctagGGTCTTGGCAAAACAGTGTCTACGATAGCTCTTATTCTCAAAGCTCGGTCGCCAATTCACCTGCTCAATCCGGAAACACAAGCCATTAAACCTGAGATTA

Basic information

species Selaginella moellendorffii
transcript EFJ07674
intron # 4
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ07674 (Selaginella moellendorffii), 3'ss of exon 4
lower sequence: LOC_Os08g08220.2 (Oryza sativa), 3'ss of exon 4
--------------------------------gtgagccttttgt-atgtcatattggttgaa--cgatctctttgtcgttgtctctagGGTCTTGGCAAAACAGTGTCTACGATAGCTCTTATTCTCAAAGCTCGG--TCGCCAATTCACCTGCTCAATCCGGAAACACAAGCCATT--AAACCTGAGATTA
                                 | |   | || |  ||| |   |  || ||  ||| |  |||    ||  |   ||||||||||||||||||||||||| || || ||||| |  |||    ||   |  || |  |  |  |   || |   |  ||   | ||  ||| ||||     
gttacttctgatttcacaacttcttgacaaagatcaatttcttattgtgttaccatccttaaagtcgagcagttttcttttaac---agGGTCTTGGCAAAACAGTGTCTACAATTGCCCTTATACAGAAACAGAGGATCCAGCAGTCTAAGT-TTATGTCTGTTGATTCAGATCGTTTAAAAGCTGAAG---


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagccttttgtatgtcatattggttgaacgatctctttgtcgttgtctctagGGTCTTGGCAAAACAGTGTCTACGATAGCTCTTATTCTCAAAGCTCGGTCGCCAATTCACCTGCTCAATCCGGAAACACAAGCCATTAAACCTGAGATTA
                                             ttgtctct  CT-rich tract
        ttttgtat  TA-rich tract