1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' |
TCTCAAGAAGTACGCTGGAGATGGAAATATTTCTAGGGAGAGTGTTGTCGGGACGCTCACCAGGTTTAAGCAAATGCAGGCGTGGAAGATAATTATCAAGgttcgtgatcttaggatagaaaagcatcaaatttttgtgtttctcatttcttctcttccag
species | Selaginella moellendorffii |
transcript | EFJ07667 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GGACGCTCACCAGGTTTAAGCAAATGCAGGCGTGGAAGATAATTATCAAG TTCACGGAATGGCTCATGGAGCAAGGATGGTACAATTTCAACCAGAAGGATEST: gi|169081221|gb|FE489263.1|FE489263
genomic: GGACGCTCACCAGGTTTAAGCAAATGCAGGCGTGGAAGATAATTATCAAGgttcgtgatc ... tctcttccagTTCACGGAATGGCTCATGGAGCAAGGATGGTACAATTTCAACCAGAAGGAT
EST: GGACGCTCACCAGGTTTAAGCAAATGCAGGCGTGGAAGATAATTATCAAG TTCACGGAATGGCTCATGGAGCAAGGATGGTACAATTTCAACCAGAAGGATEST: gi|169054767|gb|FE460563.1|FE460563
genomic: GGACGCTCACCAGGTTTAAGCAAATGCAGGCGTGGAAGATAATTATCAAGgttcgtgatc ... tctcttccagTTCACGGAATGGCTCATGGAGCAAGGATGGTACAATTTCAACCAGAAGGAT
EST: GGACGCTCACCAGGTTTAAGCAAATGCAGGCGTGGAAGATAATTATCAAG TTCACGGAATGGCTCATGGAGCAAGGATGGTACAATTTCAACCAGAAGGATEST: gi|169088078|gb|FE496450.1|FE496450
genomic: GGACGCTCACCAGGTTTAAGCAAATGCAGGCGTGGAAGATAATTATCAAGgttcgtgatc ... tctcttccagTTCACGGAATGGCTCATGGAGCAAGGATGGTACAATTTCAACCAGAAGGAT
EST: GGACGCTCACCAGGTTTAAGCAAATGCAGGCGTGGAAGATAATTATCAAG TTCACGGAATGTCTCATGGAGCAAGGATGGTACAATTTCAACCAGAAGGAT
genomic: GGACGCTCACCAGGTTTAAGCAAATGCAGGCGTGGAAGATAATTATCAAGgttcgtgatc ... tctcttccagTTCACGGAATGGCTCATGGAGCAAGGATGGTACAATTTCAACCAGAAGGAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCTCAAGAAGTACGCTGGAGATGGAAATATTTCTAGGGAGAGTGTTGTCGGGACGCTCACCAGGTTTAAGCAAATGCAGGCGTGGAAGATAATTATCAAGgttcgtgatcttaggatagaaaagcatcaaatttttgtgtttctcatttcttctcttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAAGA