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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtgagttcgtttgtttttcgttcgctttattaagtttggttggttcttcagGTATACGAAAGGATAAAAGCTCCTCTGCTTACTTTGATAAGCTCGGGTAGCCCAGAGTTATCGTATGCGGTGCTCAGCCATCTCCATTTGTTGGTAATGA

Basic information

species Selaginella moellendorffii
transcript EFJ07665
intron # 3
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169100527|gb|FE502715.1|FE502715
EST:     TCAAAGTTTTTCTTCAGCTGACAATCTCTATGGCCGACGTTCACCAGCAA                         GTATACGAAAGGATAAAAGCTCCTCTGCTTACTTTGATAAGCTCGGGCAGC
genomic: TCAAAGTTTTTCTTCAGCTGACAATCTCTATGGCCGACGTGCACCAGCAAgtgagttcgt ... ggttcttcagGTATACGAAAGGATAAAAGCTCCTCTGCTTACTTTGATAAGCTCGGGTAGC
EST: gi|169041436|gb|FE449501.1|FE449501
EST:     TCAAAGTTTTTCTTCAGCTGACAATCTCTATGGCCGACGTTCACCAGCAA                         GTATACGAAAGGATAAAAGCTCCTCTGCTTACTTTGATAAGCTCGGGCAGC
genomic: TCAAAGTTTTTCTTCAGCTGACAATCTCTATGGCCGACGTGCACCAGCAAgtgagttcgt ... ggttcttcagGTATACGAAAGGATAAAAGCTCCTCTGCTTACTTTGATAAGCTCGGGTAGC


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

gtgagttcgtttgtttttcgttcgctttattaagtttggttggttcttcagGTATACGAAAGGATAAAAGCTCCTCTGCTTACTTTGATAAGCTCGGGTAGCCCAGAGTTATCGTATGCGGTGCTCAGCCATCTCCATTTGTTGGTAATGA
                                                  ttcttc  CT-rich tract
                             tttattaagttt  TA-rich tract