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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGATATGTGTGGAGGGACTGGAAAGTGGAAAGCTCTCAGCAGGAAGCGAGCCAAGGACGTGTACGAGTTCACCGAGTGTCCCAATTGCTACGgtataagttcttggattctcacaatctctgaaagttttgcttttctacctggtttcgag

Basic information

species Selaginella moellendorffii
transcript EFJ07587
intron # 2
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: EFJ07587 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GLYMA20G38750.1 (Glycine max), 5'ss of exon 4
GTGATATGTGTGGAGGGACTGGAAAGTGGAAAGCTCTCAGCAGGAAGCGAGCCAAGGACGTGTACGAGTTCACCGAGTGTCCCAATTGCTACGgtataagttcttggattctcacaatctctgaaagttttgcttttctacctggtttcgag-----------------------------------------
 |||||||||||| || || ||||| ||||||||||| | |||||||||||| || || || ||||| || || |||||||| ||||| || ||||| |  ||  |  |   |   |   |       || ||| |   |  || |    |                                          
ATGATATGTGTGGTGGCACAGGAAAATGGAAAGCTCTTAACAGGAAGCGAGCTAAAGATGTTTACGAATTTACTGAGTGTCCAAATTGTTATGgtatgaactccagtttctacttgactccatttttgttagctataagaggtgatgataatggcatggtttattcgaagcactttttaagtagctgttctga

upper sequence: EFJ07587 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GLYMA14G27040.1 (Glycine max), 5'ss of exon 2
GTGATATGTGTGGAGGGACTGGAAAGTGGAAAGCTCTCAGCAGGAAGCGAGCCAAGGACGTGTACGAGTTCACCGAGTGTCCCAATTGCTACGgtataagttcttggattctcacaatctctgaaagttttgcttttctacctggtttcgag-----------------------------------------
 |||||||||||| || || ||||| ||||||||||| | || ||||||||| || || || ||||| || || |||||||| ||||| || ||||| |  ||  |  |   |   |   |       || ||| |   |  || |    |                                          
ATGATATGTGTGGTGGCACAGGAAAATGGAAAGCTCTTAACATGAAGCGAGCTAAAGATGTTTACGAATTTACTGAGTGTCCAAATTGTTATGgtatgaactccagtttctacttgactccatttttgttagctataagaggtgatgataatggcatggtttattcgaagcactttttaagtagctgttctga

upper sequence: EFJ07587 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: GLYMA10G44020.2 (Glycine max), 5'ss of exon 4
GTGATATGTGTGGAGGGACTGGAAAGTGGAAAGCTCTCAGCAGGAAGCGAGCCAAGGACGTGTACGAGTTCACCGAGTGTCCCAATTGCTACGgtataagttcttggattctcacaa-tctctgaaagttttgcttttctacctggtttcgag----------------------------------------
||||||||||||| || || ||||| ||||||||||| | | |||||||||| || || || || || || || |||||||| ||||| || ||||| |  ||  |  |   |   | ||  |     ||| ||| |   |  || |    |                                         
GTGATATGTGTGGTGGCACAGGAAAATGGAAAGCTCTTAACCGGAAGCGAGCTAAAGATGTTTATGAATTTACTGAGTGTCCAAATTGTTATGgtatgaactccagtttctacttgactccatttttttttagctataagaggtgatgataatggcatggtttgattcgaagcactttttaagttgctgttct

upper sequence: EFJ07587 (Selaginella moellendorffii), 5'ss of exon 2
lower sequence: PP1S247_5V6.1 (Physcomitrella patens), 5'ss of exon 3
GTGATATGTGTGGAGGGACTGGAAAGTGGAAAGCTCTCAGCAGGAAGCGAGCCAAGGACGTGTACGAGTTCACCGAGTGTCCCAATTGCTACGgtataagt-tcttggattctcacaatctctgaaagttttgcttttctacctggt-ttcgag---------------------------------------
| |||||||| || || || ||||| ||||| || |||| | |||||||  |||||||||||||||||| ||| ||||| ||||||||||||||||      |  |  |     ||    | ||   |||  | |        | || | || |                                       
GCGATATGTGCGGCGGAACGGGAAAATGGAAGGCGCTCAACCGGAAGCGGCCCAAGGACGTGTACGAGTACACAGAGTGCCCCAATTGCTACGgtaaggacatgcttcaccaggacggaatgtgtgggttgaggtgcgaggggtagtgtccgcgcggggcgacggagcgggcatttcaaaaagaggaggggac