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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtacttttgtctgccattctttctatccgacttgctggagccttacacctgttcttttcgtttttgttgcagAGCGAGATAGAAAAGGATACCGCTTTGGCAGCTTCTAAAGTGATCCTTGGTGGGAAATCCCTGAAACTGACCAGAGTCGATATTCCTCTAACGACAGTAG

Basic information

species Selaginella moellendorffii
transcript EFJ07488
intron # 4
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169019891|gb|FE426978.1|FE426978
EST:     AGACAAAGCATAGCTCTGGCGGAAACACGACTGCGTACGTTGAATTCAAG                         AGCGAGATAGAAAAGGATACCGCTTTGGCAGCTTCTAAAGTGATCCTTGGT
genomic: AGACAAAGCATAGCTCTGGCGGAAACACGACTGCGTACGTTGAATTCAAGgtacttttgt ... tttgttgcagAGCGAGATAGAAAAGGATACCGCTTTGGCAGCTTCTAAAGTGATCCTTGGT






















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

tctttctatccgacttgctggagccttacacctgttcttttcgtttttgttgcagAGCGAGATAGAAAAGGATACCGCTTTGGCAGCTTCTAAAGTGATCCTTGGTGGGAAATCCCTGAAACTGACCAGAGTCGATATTCCTCTAACGACAGTAG
                      gccttac  putative branch site (score: 3)
                              cctgttcttttcgttt  CT-rich tract
                                           tttttgtt  TA-rich tract