1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...aaattctctttggtcgatgctggaaaactttcttccactgcgaagaatttctgaaagttttctatggttttctgataaaaaaaaatttctcgatccacagGTGGAGGCTTTGCGGTCTATATACTCTGGCCAGGGAGAGTTTGAGACTGGCTATGGTGGCTCTGTCTCGTTCACTGTCCACCTTAAGTTGCTTGAGAGTT
species | Selaginella moellendorffii |
transcript | EFJ06957 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGATGGACGCCGCCACACTTCCGCGAATCTCCAGCGGCAGCTAGACGAG GTGGAGGCTTTGCGGTCTATATACTCTGGCCAGGGAGAGTTTGAGGCTGGCEST: gi|169064032|gb|FE472219.1|FE472219
genomic: TGGATGGACGCCGCCACACTTCCGCGAATCTCCAGCGGCAGCTAGACGAGgtaaaatgtt ... cgatccacagGTGGAGGCTTTGCGGTCTATATACTCTGGCCAGGGAGAGTTTGAGACTGGC
EST: TGGATGGACGCCGCCACACTTCCGCGAATCTCCAGCGGCAGCTAGACGAG GTGGAGGCTTTGCGGTCTATATACTCTGGCCAGGGAGAGTTTGAGACTGGC
genomic: TGGATGGACGCCGCCACACTTCCGCGAATCTCCAGCGGCAGCTAGACGAGgtaaaatgtt ... cgatccacagGTGGAGGCTTTGCGGTCTATATACTCTGGCCAGGGAGAGTTTGAGACTGGC
aatttctgaaagttttctatggttttctgataaaaaaaaatttctcgatccacagGTGGAGGCTTTGCGGTCTATATACTCTGGCCAGGGAGAGTTTGAGACTGGCTATGGTGGCTCTGTCTCGTTCACTGTCCACCTTAAGTTGCTTGAGAGTT
ttctgat putative branch site (score: 14)
tttctc putative PPT
ttttctgataaaaaaa TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| aaattctctttggtcgatgctggaaaactttcttccactgcgaagaatttctgaaagttttctatggttttctgataaaaaaaaatttctcgatccacagGTGGAGGCTTTGCGGTCTATATACTCTGGCCAGGGAGAGTTTGAGACTGGCTATGGTGGCTCTGTCTCGTTCACTGTCCACCTTAAGTTGCTTGAGAGTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- -ttctctt
- - - - - - - - - gctggaa
- - - - - - - - - - - - - -ctttctt
- - - - - - - - - - - - - - - - - - - - - - - atttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -ttttctg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa