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1  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CACTACAGCATCTGGTGAAGGAGGATTTGAGCAAAGTCTACTTTGGAAACTTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttcttttcctcttcttgttcttctaagagcaacacttgtctttttag

Basic information

species Selaginella moellendorffii
transcript EFJ06937
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|70670090|gb|DN838667.1|DN838667
EST:     TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG                         GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGCTCT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST: gi|169037226|gb|FE445447.1|FE445447
EST:     TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG                         GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGCTCT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST: gi|169083969|gb|FE493609.1|FE493609
EST:     TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG                         GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST: gi|169115830|gb|FE517609.1|FE517609
EST:     TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG                         GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST: gi|169036096|gb|FE445136.1|FE445136
EST:     TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG                         GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGCTCT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST: gi|169040064|gb|FE448909.1|FE448909
EST:     TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG                         GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST: gi|169096986|gb|FE500054.1|FE500054
EST:     TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG                         GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST: gi|169057611|gb|FE463662.1|FE463662
EST:     TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG                         GTACACTGGAGAGG
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGG
EST: gi|169061301|gb|FE470388.1|FE470388
EST:     TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG                         GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGCTCT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST: gi|169038917|gb|FE449634.1|FE449634
EST:     TCAGGATCCTCTCTGTNCA-TGGTGCCGAATGCTTCATCACTAGAACCGG                         GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGCTCT
genomic: TCAGGATCCTCTCTGT-CAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST: gi|169115235|gb|FE515638.1|FE515638
EST:     TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG                         GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST: gi|169022956|gb|FE431543.1|FE431543
EST:     TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG                         GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGCTCT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGT
EST: gi|70669740|gb|DN838317.1|DN838317
EST:     TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGG                         GTACACTGGAGAGGATGGGGTTTGAGATCTCTGTTTCCGTCCGAGCATGGT
genomic: TTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGG-TTTGAGATCTCTGTT-CCGTCGGAGCATGGT
EST: gi|169099533|gb|FE501045.1|FE501045
EST:     TCAGGATCCTCTCTGTNCA-TGGTGCCGAATGCTTCATCACTAGAACCGG                         GTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTNCG-AGCATGGTG
genomic: TCAGGATCCTCTCTGT-CAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGT-CGGAGCATGGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 35 (upstream exon), 34 (downstream exon)
Score: 46

CACTACAGCATCTGGTGAAGGAGGATTTGAGCAAAGTCTACTTTGGAAACTTCAGGATCCTCTCTGTCAATGGTGCCGAATGCTTCATCACTAGAACCGGgtaagtttct ... gtctttttagGTACACTGGAGAGGATGGGTTTGAGATCTCTGTTCCGTCGGAGCATGGTGTGGAGCTGGCGAAGGCACTTCTGGAGAAGTCGGAGGGGAAGATCCTTCTC




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