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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

gtaagctaaagagctacaaagcttgatcaatggtttgctgtttttcttttctgcagGTATGTAGACCTTGTGAGAAGATACCAACTAGAAATATCGCAGCCTGCCGTAGACGGGGTTTTGACTTGGCAAATGACAAAACGTAGGGGTGACGTTGAG

Basic information

species Selaginella moellendorffii
transcript EFJ06933
intron # 7
splice site 3'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169033292|gb|FE441606.1|FE441606
EST:     ATATTTATATGGGATGAAGATCTGGACTTGGAACACTTCGATGCTCAGGA                         GTATGTAGACCTTGTGAGAAGATACCAACTAGAAATATCGCAGCCTGCCGT
genomic: ATATTTATATGGGATGAAGATCTGGACTTGGAACACTTCGATGCTCAGGAgtaagctaaa ... ttttctgcagGTATGTAGACCTTGTGAGAAGATACCAACTAGAAATATCGCAGCCTGCCGT
EST: gi|169033291|gb|FE441605.1|FE441605
EST:     ATATTTATATGGGATGAAGATCTGGACTTGGAACACTTCGATGCTCAGGA                         GTATGTAGACCTTGTGAGAAGATACCAACTAGAAATATCGCAGCCTGCCGT
genomic: ATATTTATATGGGATGAAGATCTGGACTTGGAACACTTCGATGCTCAGGAgtaagctaaa ... ttttctgcagGTATGTAGACCTTGTGAGAAGATACCAACTAGAAATATCGCAGCCTGCCGT


 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

taagctaaagagctacaaagcttgatcaatggtttgctgtttttcttttctgcagGTATGTAGACCTTGTGAGAAGATACCAACTAGAAATATCGCAGCCTGCCGTAGACGGGGTTTTGACTTGGCAAATGACAAAACGTAGGGGTGACGTTGAG
                                tttgctgtttttcttt  CT-rich tract
                                       tttttctttt  TA-rich tract