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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGGTGCGCAAAATCTGCTCTTTGCAAGGAGATTATCAGCACTCCAGGTGGCATCGGTGATAAAAGACCGATGAAAAGCTTAATGGGAGACATGATAAAGGgtatggcgttgctatgagcgactgactcaatattgagcgtcatctcgttgcag

Basic information

species Selaginella moellendorffii
transcript EFJ05346
intron # 17
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|169066285|gb|FE475733.1|FE475733
EST:     CATCGGTGATAAAAGACCGATGAAAAGCTTAATGGGAGACATGATAAAGG                         GACGTTACTGGCCGAAGCTTGAAGAGGAAAGAAAGAAAAATCCAAACGTAA
genomic: CATCGGTGATAAAAGACCGATGAAAAGCTTAATGGGAGACATGATAAAGGgtatggcgtt ... ctcgttgcagGACGTTACTGGCCGAAGCTTGAAGAGGAAAGAAAGAAAAATCCAAACGTAA
EST: gi|169036576|gb|FE446526.1|FE446526
EST:     CATCGGTGATAAAAGACCGATGAAAAGCTTAATGGGAGACATGATAAAGG                         GACGTTACTGGCCGAAGCTTGAAGA
genomic: CATCGGTGATAAAAGACCGATGAAAAGCTTAATGGGAGACATGATAAAGGgtatggcgtt ... ctcgttgcagGACGTTACTGGCCGAAGCTTGAAGA
EST: gi|169037919|gb|FE443605.1|FE443605
EST:     GACCGATGAAAAGCTTAATGGGAGACATGATAAAGG                         GACGTTACTGGCCGAAGCTTGAAGAGGAAAGAAAGAAAAATCCAAACGTAA
genomic: GACCGATGAAAAGCTTAATGGGAGACATGATAAAGGgtatggcgtt ... ctcgttgcagGACGTTACTGGCCGAAGCTTGAAGAGGAAAGAAAGAAAAATCCAAACGTAA
EST: gi|169064864|gb|FE475560.1|FE475560
EST:     CATCGGTGATAAAAGACCGATGAAAAGCTTAATGGGAGACATGATAAAGG                         GACGTTACTGGCCGAAGCTTGAAGAGGAAAGAAAGAAAAATCCAAACGTAA
genomic: CATCGGTGATAAAAGACCGATGAAAAGCTTAATGGGAGACATGATAAAGGgtatggcgtt ... ctcgttgcagGACGTTACTGGCCGAAGCTTGAAGAGGAAAGAAAGAAAAATCCAAACGTAA
EST: gi|169043802|gb|FE453494.1|FE453494
EST:     CATCGGTGATAAAAGACCGATGAAAAGCTTAATGGGAGACATGATAAAGG                         GACGTTACTGGCCGAAGCTTGAAGAGGAAAGAAAGAAAAATCCAAACGTAA
genomic: CATCGGTGATAAAAGACCGATGAAAAGCTTAATGGGAGACATGATAAAGGgtatggcgtt ... ctcgttgcagGACGTTACTGGCCGAAGCTTGAAGAGGAAAGAAAGAAAAATCCAAACGTAA

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 33 (upstream exon), 35 (downstream exon)
Score: 19

GGGTGCGCAAAATCTGCTCTTTGCAAGGAGATTATCAGCACTCCAGGTGGCATCGGTGATAAAAGACCGATGAAAAGCTTAATGGGAGACATGATAAAGGgtatggcgtt ... ctcgttgcagGACGTTACTGGCCGAAGCTTGAAGAGGAAAGAAAGAAAAATCCAAACGTAATTACTCTGGCTGATAAGAATGCTCCGACTGCGGATGTGTGGAAGCTG




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