1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' |
...acaatatgataccttatgcattctcatgcctccactattctaatctgtccctgtcacttattgacttatcactccttctttgaagtcactgcctcaacagGATGAAACTCAAAGACAAGAAGATACTCAAAGGCAGGCTTGCCAA
species | Selaginella moellendorffii |
transcript | EFJ04971 |
intron # | 3 |
splice site | 3' |
intron type | U2 |
tgtccctgtcacttattgacttatcactccttctttgaagtcactgcctcaacagGATGAAACTCAAAGACAAGAAGATACTCAAAGGCAGGCTTGCCAA
tattgac putative branch site (score: 2)
ctgcctc putative PPT
acttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| acaatatgataccttatgcattctcatgcctccactattctaatctgtccctgtcacttattgacttatcactccttctttgaagtcactgcctcaacagGATGAAACTCAAAGACAAGAAGATACTCAAAGGCAGGCTTGCCAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG
- - - - atacctt
- - - - - - - - - cattctc
- - - - - - - - - - - - - tgcctcc
- - - - - - - - - - - - - - - - - ctattct
- - - - - - - - - - - - - - - - - - - - - - -tgtccct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - cttattg