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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTGCTGAGGCAACTTGACGCAGATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAGgtatattcttcacacttgtgtgtgtgtgtatgtgtaagtaagttttccactttctaaagttcaatgagactatgcatattggagtctttaccatatttttgtgaaccaaacgtcgactgtgcag

Basic information

species Physcomitrella patens
transcript PP1S9_480V6.3
intron # 2
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162176764|gb|FC353311.1|FC353311
EST:     ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAG                         GCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
genomic: ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAGgtatattctt ... gactgtgcagGCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
EST: gi|162184005|gb|FC359375.1|FC359375
EST:     ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAG                         GCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
genomic: ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAGgtatattctt ... gactgtgcagGCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
EST: gi|37829701|gb|BJ587713.1|BJ587713
EST:     ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAG                         GCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
genomic: ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAGgtatattctt ... gactgtgcagGCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
EST: gi|162184006|gb|FC359376.1|FC359376
EST:     ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAG                         GCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
genomic: ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAGgtatattctt ... gactgtgcagGCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
EST: gi|162175772|gb|FC352074.1|FC352074
EST:     ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAG                         GCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
genomic: ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAGgtatattctt ... gactgtgcagGCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
EST: gi|162175773|gb|FC352075.1|FC352075
EST:     ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAG                         GCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG
genomic: ATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAGgtatattctt ... gactgtgcagGCTGAAGAGCTTGATTTGGAGGAATATCAGCTGGGTGTGGCATATTCAAGG

Putative cis-regulatory sequences

 atgc intron ATGC exonic elements by Pertea et al.
 ATGC exon atgc putative intronic elements
 ATGC putative exonic elements identified for retained introns
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---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| 
GTGCTGAGGCAACTTGACGCAGATGCTCAAGCGCTTGAACGGGAACTCAGGGTGGCCAGGGCTGAGCTTGAGgtatattcttcacacttgtgtgtgtgtgtatgtgtaagtaagttttccactttctaaagttcaatgagactatgcatattggagtctttaccatatttttgtgaaccaaacgtcgactgtgcag

- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -  GAGCTT