1 5' 3' | 2 5' 3' | 3 5' 3' |
gtatgctctcaattttttggttgctgcactttttcatgcgtgagttatttatttgattagccgctagcatgttgtttggagtgttggcgcattcgcactcacgaaaacttttctttctcctcatttcttcgcagtctcttggttttgcagcacccgctgatgcaccgtgtaacttgctctgtctgcagGTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAGGCTCCCAAAATTTTGCAAGAGAAGGGTTTCAGCGCTGGACAAGTTTTTA
species | Physcomitrella patens |
transcript | PP1S9_440V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
EST: TGGCGACCGTATTATCGCCGAGAAG GTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAGEST: gi|162244931|gb|FC423537.1|FC423537
genomic: TGGCGACCGTATTATCGCCGAGAAGgtatgctctc ... ctgtctgcagGTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAG
EST: TTTCCATGTATCCAACCTTCGACATTGGCGACCGTATTATCGCCGAGAAG GTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAGEST: gi|162278136|gb|FC454371.1|FC454371
genomic: TTTCCATGTATCCAACCTTCGACATTGGCGACCGTATTATCGCCGAGAAGgtatgctctc ... ctgtctgcagGTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAG
EST: TTTCCATGTATCCAACCTTCGACATTGGCGACCGTATTATCGCCGAGAAG GTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAGEST: gi|162170912|gb|FC346603.1|FC346603
genomic: TTTCCATGTATCCAACCTTCGACATTGGCGACCGTATTATCGCCGAGAAGgtatgctctc ... ctgtctgcagGTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAG
EST: TTTCCATGTATCCAACCTTCGACATTGGCGACCGTATTATCGCCGAGAAG GTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAGEST: gi|162190828|gb|FC367090.1|FC367090
genomic: TTTCCATGTATCCAACCTTCGACATTGGCGACCGTATTATCGCCGAGAAGgtatgctctc ... ctgtctgcagGTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAG
EST: TTTCCATGTATCCAACCTTCGACATTGGCGACCGTATTATCGCCGAGAAG GTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAGEST: gi|100384466|gb|BY987325.1|BY987325
genomic: TTTCCATGTATCCAACCTTCGACATTGGCGACCGTATTATCGCCGAGAAGgtatgctctc ... ctgtctgcagGTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAG
EST: TTTCCATGTATCCAACCTTCGACATTGGCGACCGTATTATCGCCGAGAAG GTTTCGTATTTCTTCAGGAAGCEST: gi|162181703|gb|FC358733.1|FC358733
genomic: TTTCCATGTATCCAACCTTCGACATTGGCGACCGTATTATCGCCGAGAAGgtatgctctc ... ctgtctgcagGTTTCGTATTTCTTCAGGAAGC
EST: TTTCCATGTATCCAACCTTCGACATTGGCGACCGTATTATCGCCGAGAAG GTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAGEST: gi|162197832|gb|FC373613.1|FC373613
genomic: TTTCCATGTATCCAACCTTCGACATTGGCGACCGTATTATCGCCGAGAAGgtatgctctc ... ctgtctgcagGTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAG
EST: TTTCCATGTATCCAACCTTCGACATTGGCGACCGTATTATCGCCGAGAAG GTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAGEST: gi|162152156|gb|FC328746.1|FC328746
genomic: TTTCCATGTATCCAACCTTCGACATTGGCGACCGTATTATCGCCGAGAAGgtatgctctc ... ctgtctgcagGTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAG
EST: TTTCCATGTATCCAACCTTCGACATTGGCGACCGTATTATCGCCGAGAAG GTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAG
genomic: TTTCCATGTATCCAACCTTCGACATTGGCGACCGTATTATCGCCGAGAAGgtatgctctc ... ctgtctgcagGTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAG
gtctcttggttttgcagcacccgctgatgcaccgtgtaacttgctctgtctgcagGTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAGGCTCCCAAAATTTTGCAAGAGAAGGGTTTCAGCGCTGGACAAGTTTTTA
gtgtaac putative branch site (score: 5)
cttgctct CT-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtatgctctcaattttttggttgctgcactttttcatgcgtgagttatttatttgattagccgctagcatgttgtttggagtgttggcgcattcgcactcacgaaaacttttctttctcctcatttcttcgcagtctcttggttttgcagcacccgctgatgcaccgtgtaacttgctctgtctgcagGTTTCGTATTTCTTCAGGAAGCCCAGTCTTAATGACATCGTCATTTTCAAGGCTCCCAAAATTTTGCAAGAGAAGGGTTTCAGCGCTGGACAAGTTTTTA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA