1 5' 3' | 2 5' 3' | 3 5' 3' |
GGAATGATAAAGCTGCCTCAGTTTTCACTGTCTGTGAAGGCCCCAGTTGAAATTCATGTAGAGGAAGCCTCAAACCCTGAGCTGTACACTGTCTCGGAGGgtaagaaccctaatctaaaacttcattacaccttttcgtactccaagtgatcttgcactcaattttttagcgtggcttcctaggtcgaggagctgatgatctgtgggatgattgtttcaacag
species | Physcomitrella patens |
transcript | PP1S9_406V6.1 |
intron # | 2 |
splice site | 5' |
intron type | U2 |
EST: AATTCATGTAGAGGAAGCCTCAAACCCTGAGCTGTACACTGTCTCGGAGG GACAAGAGCTAGAAGTAGGACCATATTTGCAAACAGCAGGGCTTGACTTGAEST: gi|100438303|gb|BY979889.1|BY979889
genomic: AATTCATGTAGAGGAAGCCTCAAACCCTGAGCTGTACACTGTCTCGGAGGgtaagaaccc ... gtttcaacagGACAAGAGCTAGAAGTAGGACCATATTTGCAAACAGCAGGGCTTGACTTGA
EST: AATTCATGTAGAGGAAGCCTCAAACCCTGAGCTGTACACTGTCTCGGAGG GACAAGAGCTAGAAGTAGGACCATATTTGCAAACAGCAGGGCTTGACTTGAEST: gi|19780118|gb|BQ039517.1|BQ039517
genomic: AATTCATGTAGAGGAAGCCTCAAACCCTGAGCTGTACACTGTCTCGGAGGgtaagaaccc ... gtttcaacagGACAAGAGCTAGAAGTAGGACCATATTTGCAAACAGCAGGGCTTGACTTGA
EST: AATTCATGTAGAGGAAGCCTCAAACCCTGAGCTGTACACTGTCTCGGAGG GACAAGAGCTAGAAGTAGGACCATATTTGCAAACAGCAGGGCTTGACTTGAEST: gi|100392187|gb|BY953237.1|BY953237
genomic: AATTCATGTAGAGGAAGCCTCAAACCCTGAGCTGTACACTGTCTCGGAGGgtaagaaccc ... gtttcaacagGACAAGAGCTAGAAGTAGGACCATATTTGCAAACAGCAGGGCTTGACTTGA
EST: A-TTCATGTAGAGGAAGCCTCAA-CCCTGAGCTGTACACTGTCTCGGAAG GACAAGAGCTAGAAGTAGGEST: gi|162199066|gb|FC372391.1|FC372391
genomic: AATTCATGTAGAGGAAGCCTCAAACCCTGAGCTGTACACTGTCTCGGAGGgtaagaaccc ... gtttcaacagGACAAGAGCTAGAAGTAGG
EST: AATTCATGTAGAGGAAGCCTCAAACCCTGAGCTGTACACTGTCTCGGAGG GACAAGAGCTAGAAGTAGGACCATATTTGCAAACAGCAGGGCTTGACTTGAEST: gi|162158901|gb|FC334787.1|FC334787
genomic: AATTCATGTAGAGGAAGCCTCAAACCCTGAGCTGTACACTGTCTCGGAGGgtaagaaccc ... gtttcaacagGACAAGAGCTAGAAGTAGGACCATATTTGCAAACAGCAGGGCTTGACTTGA
EST: AATTCATGTAGAGGAAGCCTCAAACCCTGAGCTGTACACTGTCTCGGAGG GACAAGAGCTAGAAGTAGGACCATATTTGCAAACAGCEST: gi|162155129|gb|FC330923.1|FC330923
genomic: AATTCATGTAGAGGAAGCCTCAAACCCTGAGCTGTACACTGTCTCGGAGGgtaagaaccc ... gtttcaacagGACAAGAGCTAGAAGTAGGACCATATTTGCAAACAGC
EST: AATTCATGTAGAGGAAGCCTCAAACCCTGAGCTGTACACTGTCTCGGAGG GACAAGAGCTAGAAGTAGGACCATATTTGCAAACAGC
genomic: AATTCATGTAGAGGAAGCCTCAAACCCTGAGCTGTACACTGTCTCGGAGGgtaagaaccc ... gtttcaacagGACAAGAGCTAGAAGTAGGACCATATTTGCAAACAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGAATGATAAAGCTGCCTCAGTTTTCACTGTCTGTGAAGGCCCCAGTTGAAATTCATGTAGAGGAAGCCTCAAACCCTGAGCTGTACACTGTCTCGGAGGgtaagaaccctaatctaaaacttcattacaccttttcgtactccaagtgatcttgcactcaattttttagcgtggcttcctaggtcgaggagctgatgatctgtgggatgattgtttcaacag
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