Mapped EST sequences
Showing partial alignments of ESTs and genomic sequences. See full alignments
ATGC EST sequence
ATGC genomic sequence (exon)
ATGC genomic sequence (truncated intron)
EST:
gi|162230472|gb|FC407400.1|FC407400EST: AAACCTCGCAATGGCTCACTGTTGTTCATACCTTCGACACAGCACTCAAG GAGATTGGAGATTTTGAAAATTGGGTCAAGACTATGGAGTATGACTGTGCA
genomic: AAACCTCGCAATGGCTCACTGTTGTTCATACCTTCGACACAGCACTCAAGgtcagcggcc ... gtgactgcagGAGATTGGAGATTTTGAAAATTGGGTCAAGACTATGGAGTATGACTGTGCA
EST:
gi|67695379|gb|BJ955612.1|BJ955612EST: AAACCTCGCAATGGCTCNCTGTTGTTCATACCTTNGACACAGCACTCAAG GAGATTGGAGATTTTGAAAATTGGGTCAAGACTATGGAGTATGACTGTGCA
genomic: AAACCTCGCAATGGCTCACTGTTGTTCATACCTTCGACACAGCACTCAAGgtcagcggcc ... gtgactgcagGAGATTGGAGATTTTGAAAATTGGGTCAAGACTATGGAGTATGACTGTGCA
EST:
gi|100420729|gb|BY993480.1|BY993480EST: AAACCTCGCAATGGCTCACTGTTGTTCATACCTTCGACACAGCACTCAAG GAGATTGGAGATTTTGAAAATTGGGTCAAGACTATGGAGTATGACTGTGCA
genomic: AAACCTCGCAATGGCTCACTGTTGTTCATACCTTCGACACAGCACTCAAGgtcagcggcc ... gtgactgcagGAGATTGGAGATTTTGAAAATTGGGTCAAGACTATGGAGTATGACTGTGCA
EST:
gi|67572014|gb|BJ944838.1|BJ944838EST: AAACCTCGCAATGGCTCACTGTTGTTCATACCTTCGACACAGCACTCAAG GAGATTGGAGATTTTGAAAATTGGGTCAAGACTATGGAGTATGACTGTGCA
genomic: AAACCTCGCAATGGCTCACTGTTGTTCATACCTTCGACACAGCACTCAAGgtcagcggcc ... gtgactgcagGAGATTGGAGATTTTGAAAATTGGGTCAAGACTATGGAGTATGACTGTGCA
Putative cis-regulatory sequences
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
| | ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220
---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|
gctgttgttttagctacagtttctgccagctacagttttagttgcattgaaagatgcaaagttgcaattcttagcttccatggtatcatcgtgactgcagGAGATTGGAGATTTTGAAAATTGGGTCAAGACTATGGAGTATGACTGTGCACAGATTGCTGGCACACTGAAGAATGCAGTTGTAGCAAGGGAGCAAAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGCAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG