1 5' 3' | 2 5' 3' | 3 5' 3' |
gtgagttttgagcaggattggttcagttcgggcagttaactatcaattaatgaactgattgtgtcgtgtggtatgaaacttcctttccaacttgtaagtgactagatctgttgattgtatcttattctcagCACGTCAGACGCAGTCAGAGTTCCTGCTGAAGAATCCGCTTTGGTCTATGAAGAGGTTAACCCTGTCATTTCAAGTTTGGAGGTCCGAACCAACGTTGCT
species | Physcomitrella patens |
transcript | PP1S9_371V6.1 |
intron # | 1 |
splice site | 3' |
intron type | U2 |
aacttcctttccaacttgtaagtgactagatctgttgattgtatcttattctcagCACGTCAGACGCAGTCAGAGTTCCTGCTGAAGAATCCGCTTTGGTCTATGAAGAGGTTAACCCTGTCATTTCAAGTTTGGAGGTCCGAACCAACGTTGCT
tgttgat putative branch site (score: 4)
tcttattctc putative PPT
tatcttatt TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gtgagttttgagcaggattggttcagttcgggcagttaactatcaattaatgaactgattgtgtcgtgtggtatgaaacttcctttccaacttgtaagtgactagatctgttgattgtatcttattctcagCACGTCAGACGCAGTCAGAGTTCCTGCTGAAGAATCCGCTTTGGTCTATGAAGAGGTTAACCCTGTCATTTCAAGTTTGGAGGTCCGAACCAACGTTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGG