Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTGAAGGGGCTGCAACACATCGCCATCGCTGTTCCGGATCTTTCAGTTGCAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcgaaccctcagccttttcttcctatgtcctcttttcgtctgtaataatgtcggaattgccaaacgtagccgatgaagaggtgtccatgggaccattgctgatcaagaatcttgcttattcataaaatcttattgtttatgcgtgtgcag

Basic information

species Physcomitrella patens
transcript PP1S9_16V6.3
intron # 3
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|7067293|gb|AW497148.1|AW497148
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|162206596|gb|FC382354.1|FC382354
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|162231984|gb|FC409058.1|FC409058
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|18374583|gb|BJ206161.1|BJ206161
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
EST: gi|161979081|gb|EE296290.1|EE296290
EST:     CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTG                         GATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA
genomic: CAGCCGAGCATTACCGCAGTGTATTTGGTGCCCAAGTCAGTCAACCCGTGgtacatgtcg ... gcgtgtgcagGATCACGTCGATCTCAAAGTGACCAAAGTTTTTGTTCAATTGCCGAATGTA