1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' |
...gttattttctaaagcaatttctttttttatttgtcgaacccttcagcgatgcggtgaagtgtgtgccagtgcaatattgatgttgatgaatttggtacagTTGGCAGATTGGTATACACGGCTGATGAGGGATGAAATTGTAGCAGAGTGGAGAGGAAGTGAGCAGATTTCTCTCCATGTGCACTGCCATGTCAGTGGAG
species | Physcomitrella patens |
transcript | PP1S9_169V6.1 |
intron # | 2 |
splice site | 3' |
intron type | U2 |
EST: TTAATCANCANCAA TTGGCAGATTGGTATACACGGCTGATGAGGGATGAAATTGTAGCAGAGTGGEST: gi|162274219|gb|FC449979.1|FC449979
genomic: TTAATCAACAACAAgtgagtgcaa ... tttggtacagTTGGCAGATTGGTATACACGGCTGATGAGGGATGAAATTGTAGCAGAGTGG
EST: TTACAGGAGATTTGCTTTTGTCTATCGGCCCCTCTCTTAATCAACAACAA TTGGCAGATTGGTATACACGGCTGATGAGGGATGAAATTGTAGCAGAGTGGEST: gi|162274220|gb|FC449980.1|FC449980
genomic: TTACAGGAGATTTGCTTTTGTCTATCGGCCCCTCTCTTAATCAACAACAAgtgagtgcaa ... tttggtacagTTGGCAGATTGGTATACACGGCTGATGAGGGATGAAATTGTAGCAGAGTGG
EST: TTACAGGAGATTTGCTTTTGTCTATCGGCCCCTCTCTTAATCAACAACAA TTGGCAGATTGGTATACACGGCTGATGAGGGATGAAATTGTAGCAGAGTGGEST: gi|162265106|gb|FC440985.1|FC440985
genomic: TTACAGGAGATTTGCTTTTGTCTATCGGCCCCTCTCTTAATCAACAACAAgtgagtgcaa ... tttggtacagTTGGCAGATTGGTATACACGGCTGATGAGGGATGAAATTGTAGCAGAGTGG
EST: TTACAGGAGATTTGCTTTTGTCTATCGGCCCCTCTCTTAATCAACAACAA TTGGCAGATTGGTATACACGGCTGATGAGGGATGAAATTGTAGCAGAGTGG
genomic: TTACAGGAGATTTGCTTTTGTCTATCGGCCCCTCTCTTAATCAACAACAAgtgagtgcaa ... tttggtacagTTGGCAGATTGGTATACACGGCTGATGAGGGATGAAATTGTAGCAGAGTGG
gcgatgcggtgaagtgtgtgccagtgcaatattgatgttgatgaatttggtacagTTGGCAGATTGGTATACACGGCTGATGAGGGATGAAATTGTAGCAGAGTGGAGAGGAAGTGAGCAGATTTCTCTCCATGTGCACTGCCATGTCAGTGGAG
aatattgat TA-rich tract
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| gttattttctaaagcaatttctttttttatttgtcgaacccttcagcgatgcggtgaagtgtgtgccagtgcaatattgatgttgatgaatttggtacagTTGGCAGATTGGTATACACGGCTGATGAGGGATGAAATTGTAGCAGAGTGGAGAGGAAGTGAGCAGATTTCTCTCCATGTGCACTGCCATGTCAGTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG