Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   		5  
 5'  3'   		6  
 5'  3'   		7  
 5'  3'   		8  
 5'  3'   		9  
 5'  3'   		10  
 5'  3'   		11  
 5'  3'   		12  
 5'  3'   		13  
 5'  3'   		14  
 5'  3'   		15  
 5'  3'   		16  
 5'  3'   		17  
 5'  3'   		18  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

...atgcttgatttagtttttgtcttgtgaagcaaaaaaatcacttttttgtgtatgattattcatgtatgatttacattcattgtggttttatttggcttagTTGGTGTTACTACAAAAACTATTAGTGGAATGGTTACAAGCACAAGCCTCTTGGATGTACCTGGAGCCAATATTTGGATCTCCAGATATTATAGAACAAA

Basic information

species Physcomitrella patens
transcript PP1S9_164V6.3
intron # 5
splice site 3'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S9_164V6.3 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ37187 (Selaginella moellendorffii), 3'ss of exon 12
atgcttgatttagtttttgtcttgtgaagcaaaaaaatcacttttttgtgtatgattattcatgtatgatttacattcattgtggttttatttggcttagTTGGTGTTACTACAAAAACTATTAGTGGAATGGTTACAAGCACAAGCCTCTTGGATGTACCTGGAGCCAATATTTGGATCTCCAGATATTATAGAACAAA
                                             ||||   |     ||   ||| ||  || | | |  |||||| | ||     ||| |    ||  | ||| |  |  |   ||| ||| |  ||   |||||  | |||||||| ||||||||||| |||||||| || |||||||| || ||||
--------------------------------------------gttgtagctt-ccgtttgggta-gacctatactgac-gtggttgttttca---tagATCACATTGATGCAAGACGTTCTGCGGGAGTGGCTCAAAATGCAAGCGGCATGGATGTATCTGGAGCCAATTTTTGGATCACCTGATATTATCGAGCAAA

upper sequence: PP1S9_164V6.3 (Physcomitrella patens), 3'ss of exon 5
lower sequence: EFJ27757 (Selaginella moellendorffii), 3'ss of exon 12
atgcttgatttagtttttgtcttgtgaagcaaaaaaatcacttttttgtgtatgattattcatgtatgatttacattcattgtggttttatttggcttagTTGGTGTTACTACAAAAACTATTAGTGGAATGGTTACAAGCACAAGCCTCTTGGATGTACCTGGAGCCAATATTTGGATCTCCAGATATTATAGAACAAA
                                             ||||   |     ||   ||| ||  || | | |  |||||| | ||     ||| |    ||  | ||| |  |  |   ||| ||| |  ||   |||||  | |||||||| ||||||||||| |||||||| || |||||||| || ||||
--------------------------------------------gttgta-gtttccgtttgggta-gacctatactgac-gtggttgttttca---tagATCACATTGATGCAAGACGTTCTGCGGGAGTGGCTCAAAATGCAAGCGGCATGGATGTATCTGGAGCCAATTTTTGGATCACCTGATATTATCGAGCAAA


















 atgc   intronic sequence     ATGC   exonic sequence

Intronic sequence truncated to 55 bases.

ttgtgtatgattattcatgtatgatttacattcattgtggttttatttggcttagTTGGTGTTACTACAAAAACTATTAGTGGAATGGTTACAAGCACAAGCCTCTTGGATGTACCTGGAGCCAATATTTGGATCTCCAGATATTATAGAACAAA
                                        ttttattt  CT-rich tract
     tatgattatt  TA-rich tract